Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0149 ATGAGCTACGGTCACTGGTCACTCGGAAATTGGCAGACCGGAGCTTTACCATGGAGGAATTGGCAAACAGGAGTGACCAATTATGCCAGGAATCGGCAGCCTGGAGCCACCAGTAGTGCTAGGAATTGGCAGGTTCGAGCAGAACCAATGTGGAATTGGCAGACAAGGATGGCACCACCAGGGAATTGGCAGACTGGAGTAGCACCACGGGCAAACTGGCATACTGGACCGGCACCATCCTGGAACCGGCAGACTCAAGTGGCCAGGGGTGTTGGGAACTGGCAGAATGGAATGGCAACAATGGGTTATTGGCGGACTGGAGTCACCGATGGTATCGGACATTGGCAGACTGGGCTGGCACCAGGAGGCAATTGGCATATTGGACCAAACTATAGCCCCTGGGATTGGCAGACTGGACTGCTGACAACAGAGGGCAATTGGCATACTGGACCAAACTATGGTGCATGGAATTGGCAGACTGGACTGGACTATGGCGCATTCTTTCCCTGGTCCCTTGCCTTCCCAGCAGCTTGGGATGCCAGTGGAGCTGCGCAGGATCCATGGAGGCCATTAGAAGAGAGCATGCCCCGCATCTTAACAGGTTTCCCACCACAACCTCATCCCACCAGTCCAAAGTGCAGTTTACAGGCTACCCTGGAATTTCCAGACCAATGGCATATACAGATGCCTGCACATGAAGAGCAGCCCAGATTGACTCGAGCAGAACAGAGGGCAGCCTTGGAGAAGCTAAAGAAAGAAATCTACAAGCCTCTGCTGAAGAGGAACGGTGACAATGTTGGGGAGGATGTTCATGAGAAGGAAAAGGAGAAAGACCAAGATACTGAGACGTGTGTCATTTGCTTAGAAGATTTCAAGCCTGAGGAGGAAGTGATGCTCACACCGTGCAACCATATGTTCCATGAGGATTGCATCGTTCCATGGGTGAAGAGCCATGGCCAGTGCCCCATCTGCCGTTTGCAATTCGTGAGGTTGCTCTTGAACAGAAATCAACCACAGTGA 1020 0.5235 MSYGHWSLGNWQTGALPWRNWQTGVTNYARNRQPGATSSARNWQVRAEPMWNWQTRMAPPGNWQTGVAPRANWHTGPAPSWNRQTQVARGVGNWQNGMATMGYWRTGVTDGIGHWQTGLAPGGNWHIGPNYSPWDWQTGLLTTEGNWHTGPNYGAWNWQTGLDYGAFFPWSLAFPAAWDASGAAQDPWRPLEESMPRILTGFPPQPHPTSPKCSLQATLEFPDQWHIQMPAHEEQPRLTRAEQRAALEKLKKEIYKPLLKRNGDNVGEDVHEKEKEKDQDTETCVICLEDFKPEEEVMLTPCNHMFHEDCIVPWVKSHGQCPICRLQFVRLLLNRNQPQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0149 339 SUPERFAMILY RING/U-box 274 331 - -
Vvi12g0149 339 CDD RING-H2_PA-TM-RING 283 325 - -
Vvi12g0149 339 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Vvi12g0149 339 SMART ring_2 284 324 IPR001841 -
Vvi12g0149 339 PANTHER SI:CH211-59O9.10 217 325 - -
Vvi12g0149 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 329 IPR013083 -
Vvi12g0149 339 Pfam Ring finger domain 283 325 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0149 Vvi-Chr12 2278915 2280538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0149 242 330 C3H Transcription Factor Family AT3G58720 42.574 1.16e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0149 - K19041 vvi:104880831 755.362