Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0148 ATGAGCCGTGGCACCAACAATTTGACGAGGATGCTGGGAAATCAGCAAACTCGACCAGACTATAGTGCCCGTCTTCCTTGGTATCTTTCCCATGAAGCCACTTCAGATGCCAATTATTTAGTACATGATCCATGGAGCCCATTAGAGGAGAGACTGCTCCTCAGCTTGGCAGGTTTTCCACGACAACCTCCACCGCTTCAAATTCTAGTCTTGGATGATGAAATTGCAAGAGAGTTGAACCGCAGGCCCCGAGAACCGCTTACAGCCATTGCTGGGCCATGGACAAGGCAGGCTTCTCCGTATCAGGAGCAATCCAAATTGACTCAAGATGAGCAAAAGGTAGCCTTACAAAAGCTAAAGAAGGAAATCTACAATCCTATGCCAAAGATAATTTCCAGGAGATTGAGCTTGTTTTACCAAGACAATGACAGCTACCATGTGAGTGAGAAGAGAAAGGAGCATGAAGACCTGAAGAGGTGTGCCATCTGCTTAGAAGATTTCGAGCCCAGAGAGCAGGTGCTGCTCACCCCATGCAACCATATGTTCCATGAGGATTGCATCGTTCCCTGGGTGAAGAACCATGGCCAGTGCCCAGTATGTCGGTTTGCAATATGCGACCGAATGAAACAGAGCACAGCACCCTCGAACAATAACATGCCTGTGATCTATTTCTAG 675 0.477 MSRGTNNLTRMLGNQQTRPDYSARLPWYLSHEATSDANYLVHDPWSPLEERLLLSLAGFPRQPPPLQILVLDDEIARELNRRPREPLTAIAGPWTRQASPYQEQSKLTQDEQKVALQKLKKEIYNPMPKIISRRLSLFYQDNDSYHVSEKRKEHEDLKRCAICLEDFEPREQVLLTPCNHMFHEDCIVPWVKNHGQCPVCRFAICDRMKQSTAPSNNNMPVIYF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0148 224 FunFam RING/U-box superfamily protein 144 218 - -
Vvi12g0148 224 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Vvi12g0148 224 SUPERFAMILY RING/U-box 145 207 - -
Vvi12g0148 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 218 IPR013083 -
Vvi12g0148 224 SMART ring_2 160 200 IPR001841 -
Vvi12g0148 224 PANTHER TARGET OF ERK KINASE MPK-1 116 206 - -
Vvi12g0148 224 Pfam Ring finger domain 159 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0148 Vvi-Chr12 2274616 2275526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0148 110 218 C3H Transcription Factor Family AT3G58720 50.877 4.10e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0148 - K19041 vvi:100853556 472.626