Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0147 ATGAACCGCACTACTAGAAGGATGCTGGGAAACTCCAATACTACTGAACAAGACTTTTATCCTTCTTCTTCTGATACACTGAGGGCAATAGACGAGGCCATCAGATTAAACGGCCTCCGCTTAACAAGTTTACCAGCACAACCTCGTACACCACATCAAATTCTTGTATTAGATGATGATATTGCGAGAGGGTTGAGCCTCAGGTCGAGACAGCTTGTCTCAGAATCCTATCCAAGCCTTGCTGGCCAAAGAACTAGACAGGTTCCTACACATCAAGAGCAGTCCAGATTTACTCACAATGAGCAGAACAAGGCCTTCAAGAAGCTAAGGAAAGAATTTTATATTCCTAAGCCAAAGAGGATTGTAATGAGATTGTACTACAGAGAAAATCCCAAAAATTATATCAATGAGCAGAATGAAGGTCGTGAGAGGTGTGCCATTTGCTTGGAAGATTTCGAGATAGAGGAGGTGCTTGTCACCCCATGCAACCATATTTTCCATGAGGAATGCATTATTCCCTGGGTGAAGAGCCATGATCAGTGCCCAGTCTGCCGGTTTGCCGGTTTGCAATAG 573 0.4398 MNRTTRRMLGNSNTTEQDFYPSSSDTLRAIDEAIRLNGLRLTSLPAQPRTPHQILVLDDDIARGLSLRSRQLVSESYPSLAGQRTRQVPTHQEQSRFTHNEQNKAFKKLRKEFYIPKPKRIVMRLYYRENPKNYINEQNEGRERCAICLEDFEIEEVLVTPCNHIFHEECIIPWVKSHDQCPVCRFAGLQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0147 190 CDD RING-H2_PA-TM-RING 145 185 - -
Vvi12g0147 190 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 66 186 - -
Vvi12g0147 190 SUPERFAMILY RING/U-box 132 186 - -
Vvi12g0147 190 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g0147 190 SMART ring_2 145 184 IPR001841 -
Vvi12g0147 190 Pfam Ring finger domain 144 185 IPR001841 -
Vvi12g0147 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 190 IPR013083 -
Vvi12g0147 190 ProSiteProfiles Zinc finger RING-type profile. 145 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0147 Vvi-Chr12 2265770 2266849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0147 100 190 C3H Transcription Factor Family AT3G58720 50.980 1.18e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0147 - K19041 vvi:104880832 393.275