Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0144 ATGGCCTGGCATGGATTGGAGTCTTGTTATGTTGCTGTTCTTTCCCTCCTCGCTCTCATCTCTCTCTTTCGTGGTGCTACCCAAGATTCGGACGATTATCCTAATATTGCACGTCTTTCCAATTCATGGATTAACGTTCATCAAGAAATTATATATTACTCGGATGAGGCAGTCACTGTGCTGCCCATTCTTGACATCGAAAGCGAAGGTGCAGGGTTCTGCTTTGGATTCTACTGCCGCAATTCAAGAAATGAATGCCTCTTGGCTGTTGTCATCTACCACCCCTACAGTTTCTACAGTTCCCTTCTTATAGGGTATCCAAGACTAGTGTGGTCTGCTAATCGGAACAATCTTGTCCGGGTAAATGCTACTTTACAGCTAGCTGGAGGAGGAGACTTGATCTTGAAGGATGCTGATGGAAAATTTGTTTGGTCCACAAACACAACAGGAAAGAGTGTTTCAGGCTTAAAATTGACTGAAGCCGGAGATGTTGTCCTCTTTGACACAAACAATGCTACGGTTTGGCAGTCTTTTGACCACCCCACCGATGCTCTACTTCAGGGCCAAAAGATGGTTTCAGGGAAGAAGCTTACAGCCAGCTTAGCCACAGATAACTGGACTGAAGGTATGTTATCACTTTCCGTTACTAATGAAGCTCTGGTAGCTTATGTAGAGTCCAATCCTCCTCAATTCTATTATCGTCTTGAGGGCTCGGATACAGACACAAAAGGTAAAACAAAACAAAATTATATCTTACTCGGGAATGAAAGCCTCGATGGGTTCATACATGGTGCTGACCCAAACTATCCAGATTCAACGATTTCCATTCCTATAGACTTGTCTGCTCAGTTCATCAAACTGGGGCCGGATGGTCATTTGAGAGCCTACGGGTGGAAAGAATCTGACTGGGAGGTGGCTGATCTTCTGACTGACTGGTTATCATTTCCAAATCATCTAAGTGATGTAGATGATTGTCAATACCCGCTGGTGTGCGGGAAATATGGTATTTGCGAAGAAAGACGGTGTAGCTGTCCCCCACCATCTCCTGATGGAACAAACTATTTCAGGTCAGTAGATGACAACCTACCCAGTCATGGATGCTATGCAACTAAACCCATTGCTTGTGGCTCTTCTCAATATCATCAACTGCTTGAGCTTCAACACGTAGGTTACTTTGCCTTCAGTTCTGACATTAGCAGTACAAATGTAGAAAATTGCAAGCAGGCCTGTTTGAACAACTGTTCATGCAAAGCTGCTCTTTTTCAATATACAGACGATCCTTTACATGGGGATTGCTGCCTTCTATCTGAGGTCTTTTCATTGATGACCACTGATCGGGGTGATATTAAGTCATTCACGTTCCTTAAAGTGGCGATTTCTCCTATTGATATTGGAAACACAATTCAGAAGAAAAAAGGACATGCTAGAGTTATACTCGTATCAAGTCTTGCAGCTTTCTTTGGTGTCTTTATTTTTATGACCACTTGCTTCTTTCTTTTCAGAAAGAAAAAGGATTCTATTGAATTTGAGGAGGATTACCTAGATCAGGTATCAGGAATGCCCACTAGATTCTCCTTCCAAGACTTGAAATCTACAACACAAAACTTTAGTTGCAAGATTGGGGAAGGAGGATTCGGGTCTGTCTATGAAGGCACTTTGGGCAATGGTGTCAAAGTCGCAGTGAAGCATCTTGAAGGTTTAGCTCAAGTAAAGAAATCATTCTCAGCTGAAGTTGAGACGATAGGCAGCATTCACCATGTCAATTTGGTAAGACTGATTGGATTTTGCGCCGAAAAATCACATAGGCTCTTAGTCTATGAGTACATGTGTAATGGGTCCTTGGATAAATGGATCTTCCACAAAAACCAACATCTTTCTCTTGGTTGGGAATCCAGAAGAAAGATCATCCTTGACATAGCGAAGGGACTAGCCTATCTCCATGAAGAATGCAGGCAGAAGATATTTCACTTGGATATCAAACCCCAAAACATCCTTTTGGATGAACACTTGAATGCAAAAGTTTCCGATTTCGGACTGTCAAAACTGATTGACAAGGACCAAAGCCAAGTAGTAACAACAATGAGGGGGACCCCGGGTTACTTGGCTCCCGAATGGTTGAGCTCAGTTATCACAGAAAAAGTGGACGTCTACAGCTTTGGCGTTGTGTTGTTAGAAATTCTGTGTGGACGAAGAAATGTAGACCGATCTCAACCTGAAGAAGATATGCATTTACTCGGTATTTTCAGAAGGAAGGCAAATGAGGGACAAGTGTTGGATATGGTTGATAAAAACAGTGAGGATATGCAGAGACATGGAGCAGATGTTTTGGAGCTGATGAAGGTTGCTGCATGGTGCCTACAAAATGATTATGCCAAGAGACCTTCCATGTCCGTGGTGGTGAAGGCTTTGGAGGGTTTGGTTGATATTGAAGGTGACCTGGATTACAATTTTTCGTTTTCACCATTAGCTAGGGGCATTGCTCACAAGGTTGCTGCTGCTGCTACTCCAATTATGCCATCAGCCTTATCAGGACCTAGGTAA 2541 0.4298 MAWHGLESCYVAVLSLLALISLFRGATQDSDDYPNIARLSNSWINVHQEIIYYSDEAVTVLPILDIESEGAGFCFGFYCRNSRNECLLAVVIYHPYSFYSSLLIGYPRLVWSANRNNLVRVNATLQLAGGGDLILKDADGKFVWSTNTTGKSVSGLKLTEAGDVVLFDTNNATVWQSFDHPTDALLQGQKMVSGKKLTASLATDNWTEGMLSLSVTNEALVAYVESNPPQFYYRLEGSDTDTKGKTKQNYILLGNESLDGFIHGADPNYPDSTISIPIDLSAQFIKLGPDGHLRAYGWKESDWEVADLLTDWLSFPNHLSDVDDCQYPLVCGKYGICEERRCSCPPPSPDGTNYFRSVDDNLPSHGCYATKPIACGSSQYHQLLELQHVGYFAFSSDISSTNVENCKQACLNNCSCKAALFQYTDDPLHGDCCLLSEVFSLMTTDRGDIKSFTFLKVAISPIDIGNTIQKKKGHARVILVSSLAAFFGVFIFMTTCFFLFRKKKDSIEFEEDYLDQVSGMPTRFSFQDLKSTTQNFSCKIGEGGFGSVYEGTLGNGVKVAVKHLEGLAQVKKSFSAEVETIGSIHHVNLVRLIGFCAEKSHRLLVYEYMCNGSLDKWIFHKNQHLSLGWESRRKIILDIAKGLAYLHEECRQKIFHLDIKPQNILLDEHLNAKVSDFGLSKLIDKDQSQVVTTMRGTPGYLAPEWLSSVITEKVDVYSFGVVLLEILCGRRNVDRSQPEEDMHLLGIFRRKANEGQVLDMVDKNSEDMQRHGADVLELMKVAAWCLQNDYAKRPSMSVVVKALEGLVDIEGDLDYNFSFSPLARGIAHKVAAAATPIMPSALSGPR* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0144 846 CDD B_lectin 66 181 IPR001480 -
Vvi12g0144 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vvi12g0144 846 Gene3D Transferase(Phosphotransferase) domain 1 609 815 - -
Vvi12g0144 846 Pfam PAN-like domain 383 434 IPR003609 -
Vvi12g0144 846 FunFam S-receptor-like kinase 5 609 812 - -
Vvi12g0144 846 CDD STKc_IRAK 540 806 - -
Vvi12g0144 846 Pfam Protein kinase domain 539 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0144 846 FunFam Os04g0303100 protein 100 232 - -
Vvi12g0144 846 FunFam serine/threonine-protein kinase PBS1-like 502 608 - -
Vvi12g0144 846 ProSiteProfiles Bulb-type lectin domain profile. 49 179 IPR001480 -
Vvi12g0144 846 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 60 810 - -
Vvi12g0144 846 SMART serkin_6 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0144 846 SMART blect_4 60 181 IPR001480 -
Vvi12g0144 846 Gene3D Phosphorylase Kinase; domain 1 500 608 - -
Vvi12g0144 846 CDD PAN_AP_plant 372 458 - -
Vvi12g0144 846 ProSiteProfiles Protein kinase domain profile. 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0144 846 Pfam D-mannose binding lectin 109 197 IPR001480 -
Vvi12g0144 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 107 234 IPR036426 -
Vvi12g0144 846 SUPERFAMILY Protein kinase-like (PK-like) 517 804 IPR011009 -
Vvi12g0144 846 PIRSF SRK 58 824 IPR024171 GO:0004674
Vvi12g0144 846 Gene3D - 89 230 - -
Vvi12g0144 846 ProSitePatterns Protein kinases ATP-binding region signature. 540 562 IPR017441 GO:0005524
Vvi12g0144 846 ProSiteProfiles PAN/Apple domain profile. 375 458 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0144 Vvi-Chr12 2243479 2246019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0144 490 809 Receptor kinase-like Gene Family AT5G20050 41.880 1.11e-82 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0144 Pkinase 6.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0144 - - vvi:100243833 1722.6