Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0143 ATGGCCTGGCATGGATTGGAGTCTTGGTATGTTCCTGTTCTTTCCTTCCTCGCCCTCATCTCTCTCTTTTATGGTGCTACCCTAGATTTGGACGATGATCCTAATATTGTTGCACGTCTCTCCAGTTCATGGACTAACGTTGAACAAGAGCTTACATATGACCAGGGGGATGAGATGGTCACTGTGCAGCCCATTCTTGACATCAAAAGCGAAGGTAGAGGGTTCTGCTTTGGATTCTACTGCCGCTATTTAAGAGATGAATGCCTCTTGGCTGTTGTCATCTACCACCCCATCAATTTCCTTTCTATAGAATCTCCAGAACTAGTGTGGTCTGCTAATCGGAACGATCCTGTCCGGGTAAATGCTACTTTACAGCTAACTGGAGGAGGAGACTTGATCTTGAAGGATGCTGATGGCAAATTTGTTTGGTCCACAAACACAACAGGAAAGAGTGTTTCAGGCTTAAAATTGACTGAAGCCGGAGATGTTGTCCTCTTTGACGCAAACAATGCTACGGTTTGGCAGTCTTTTGACCACCCCACCGATGCTCTACTTCAGGGCCAAAAGATGGTTTCTGCAGGGAAGAAGCTTACAGCCAGCTTAGCCACAGATAACCGGACTGAAGGTATGTTATCACTTTCCGTTACTAATGAAGCTCTGGTAGCTTATGTAGAGTCCAATCCTCCTCAATTCTATTATCGTCTTGAGGGCTCGGATACAGACACAAAAGGTAAAACAAAACAAAATTATATCTTACTCGGGAATGAAAACCTCGATGTGATTATACATGGTGCTGAACAAAACCATCCAGATTCAAGGATTTCCATTCCTGCAAACTTGTCTGCTCAGTTCATCAAACTGGGGCCGGATGGTCATTTGAGAGCCTACGGGTGGAAAGATTATGACTGGGAGGCGGCTGATCTTCTGACTGATTGGTTATCATTTCCAAATCATCTAAGTGATGTAGATGATTGTCAATACCCGCTGGTGTGCGGGAAATATGGCATTTGCTCAGAAAGACAGTGTAGCTGTCCCCCACCATCTCCTGATGGAACAAACTATTTCAGGCCAGTAGATGACAACCTACCCAGTCATGGATGCTATGCAACTAAACCTATTGCTTGCGGCTCTTCTCAATATCATCATCTTCTTGAGCTTCAACACGTATGTTACTTTGCCTTCAGTTCTGACATTAGCAGTACAAATGTAGAAAATTGCAAGCAGGCCTGTTTGAACAACTGTTCATGCAAAGCTGCTGTTTTTAAATATACAGACGATCCTTTACATGGGGATTGCTGCCTTCTATCTGAGGTCTTTTCATTGATGACCGCTGATCGGGATGATATTAACTCATTCACGTTCCTTAAAGTGGCGGTTTCTCCTATTGATATTCAGAAGAAAAAAGGGCATGCTAGAGTTATACTCGTATCAAGTCTTGCAGCTTTCTTTGGTGTCTTTATTTTTATGACCACTTGCTTCTTTCTTTTCAGAAAAAAAAAGGATTCTATTGAATTTGAGGAGGATTACCTAGATCAGGTATCAGGAATGCCCACTAGATTCTCCTTCCAAGACTTGAAATCTACAACACAAAACTTTAGTTGCAAGCTTGGGGAAGGAGGATTCGGGTCAGTCTATGAAGGCACTTTAAGCAATGGTGCCAAAGTTGCAGTGAAGCATCTTGAAGGTTTAGCTCAAGTAAAGAAATCATTCTCAGCTGAAGTTGAGACGATAGGCAGCATTCACCATGTCAATTTGGTAAGACTGATTGGATTTTGCGCTGAAAAATCACATAGGCTCTTAGTCTATGAGTACATGTGTAATGGGTCCCTGGATAAATGGATCTTCCACAAAAACCAACATCTTTCCCTTGGTTGGGAATCCAGAAGAAAGATCATCCTTGACATAGCGAAGGGACTAGCCTATCTCCATGAAGAATGCAGGCAGAAGATATTTCACTTGGATATCAAACCCCAAAACATCCTTTTGGATGAACACTTGAATGCAAAAGTTTCCGATTTCGGATTGTCAAAACTGATTGACAAGGACCAAAGCCAAGTTGTAACAACAATGAGGGGGACCCCGGGTTACTTGGCTCCCGAATGGTTGAGCTCAGTTATCACAGAAAAAGTGGACGTCTACAGCTTTGGCGTTGTGTTGTTAGAAATTCTGTGTGGGCGAAGAAATGTAGACCGATCTCAACCTGAAGAAGATTTGCATTTACTCGGTATTTTCAGAAGGAAGGCAAATGAAGGACAAGTGTTGGATATGGTTGATAAAAACAGTGAGGATATGCAGGGACATGGAGCAGAAGTTATGGAGCTGATGAAGGTTGCTGCATGGTGCCTACAAAATGATTATGCCACGAGGCCTTCCATGTCCGTGGTGGTGAAGGCTTTGGAGGGTTTGGTTGATATTGAAGGTGACCTGGATTACAATTTTTCGTTTTCACCATTAGCTAGGGGCATTGCTCACAAGGTTGCTGCTGCTGCTACTCCAATTATGCCATCAGCCTTATCAGGACCTAGGTAA 2529 0.4318 MAWHGLESWYVPVLSFLALISLFYGATLDLDDDPNIVARLSSSWTNVEQELTYDQGDEMVTVQPILDIKSEGRGFCFGFYCRYLRDECLLAVVIYHPINFLSIESPELVWSANRNDPVRVNATLQLTGGGDLILKDADGKFVWSTNTTGKSVSGLKLTEAGDVVLFDANNATVWQSFDHPTDALLQGQKMVSAGKKLTASLATDNRTEGMLSLSVTNEALVAYVESNPPQFYYRLEGSDTDTKGKTKQNYILLGNENLDVIIHGAEQNHPDSRISIPANLSAQFIKLGPDGHLRAYGWKDYDWEAADLLTDWLSFPNHLSDVDDCQYPLVCGKYGICSERQCSCPPPSPDGTNYFRPVDDNLPSHGCYATKPIACGSSQYHHLLELQHVCYFAFSSDISSTNVENCKQACLNNCSCKAAVFKYTDDPLHGDCCLLSEVFSLMTADRDDINSFTFLKVAVSPIDIQKKKGHARVILVSSLAAFFGVFIFMTTCFFLFRKKKDSIEFEEDYLDQVSGMPTRFSFQDLKSTTQNFSCKLGEGGFGSVYEGTLSNGAKVAVKHLEGLAQVKKSFSAEVETIGSIHHVNLVRLIGFCAEKSHRLLVYEYMCNGSLDKWIFHKNQHLSLGWESRRKIILDIAKGLAYLHEECRQKIFHLDIKPQNILLDEHLNAKVSDFGLSKLIDKDQSQVVTTMRGTPGYLAPEWLSSVITEKVDVYSFGVVLLEILCGRRNVDRSQPEEDLHLLGIFRRKANEGQVLDMVDKNSEDMQGHGAEVMELMKVAAWCLQNDYATRPSMSVVVKALEGLVDIEGDLDYNFSFSPLARGIAHKVAAAATPIMPSALSGPR* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0143 842 FunFam serine/threonine-protein kinase PBS1-like 498 604 - -
Vvi12g0143 842 FunFam Os04g0303100 protein 98 232 - -
Vvi12g0143 842 Pfam Protein kinase domain 535 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0143 842 ProSiteProfiles Protein kinase domain profile. 530 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0143 842 Pfam D-mannose binding lectin 108 193 IPR001480 -
Vvi12g0143 842 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Vvi12g0143 842 PIRSF SRK 40 820 IPR024171 GO:0004674
Vvi12g0143 842 Gene3D - 91 228 - -
Vvi12g0143 842 FunFam S-receptor-like kinase 5 605 808 - -
Vvi12g0143 842 CDD B_lectin 70 180 IPR001480 -
Vvi12g0143 842 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 61 806 - -
Vvi12g0143 842 CDD STKc_IRAK 536 802 - -
Vvi12g0143 842 SUPERFAMILY Protein kinase-like (PK-like) 513 800 IPR011009 -
Vvi12g0143 842 ProSiteProfiles PAN/Apple domain profile. 375 458 IPR003609 -
Vvi12g0143 842 CDD PAN_AP_plant 372 458 - -
Vvi12g0143 842 ProSiteProfiles Bulb-type lectin domain profile. 56 178 IPR001480 -
Vvi12g0143 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Vvi12g0143 842 SMART serkin_6 530 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0143 842 SMART blect_4 62 180 IPR001480 -
Vvi12g0143 842 Gene3D Phosphorylase Kinase; domain 1 496 604 - -
Vvi12g0143 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 106 234 IPR036426 -
Vvi12g0143 842 Gene3D Transferase(Phosphotransferase) domain 1 605 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0143 Vvi-Chr12 2196401 2198929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0143 486 805 Receptor kinase-like Gene Family AT5G20050 41.880 5.83e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0143 Pkinase 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0143 - - vvi:100245340 1638.24