Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0142 ATGGGCCTGTATCGGATGGAGTCTTCTTCTGTTTCTGCTCTTCTTTTTTCTCTTCTACTGATCTCTTGTTTCCCCCTAACCGATGCTCAATATATCCAATATCCAAGTAATGCAAACCTCTCTAGTTCATGGACCAACAAAATTGGGGAGGTGATATCAACAAATTCCTCAGAGTATGCTGTTCCACAGCCCATCCTTCTTAGAGAAACCACTGGCTCAGGTTTCATCTGTGGCTTCTACTGCTACATTGGGAGCGACGCTTGCTTCTTTGGTGTCCTTATCTTCCAAAACATGGATTTACCAGAACTTGTGTGGTCTGCTAATCGAAACAATCCGTTCAGAATTAATGCTACTTCTACCCTGGAACTTACTGAAGGAGGAGATTTGACCTTAGAAGATGCTGATGGCACCCTGATTTGGTCTACAAACACAAGTGGCAAATCTATTGCAGGATTAAACTTAACTGAAGCAGGCAACCTTGTGCTCTTTGACCAAAATAACAATACCGTTTGGCAGTCTTTTGATTACCCGACAGACTGTTTAGTTCCCAGCCAAAAGTTGGTTTCAGGGAAGGAGCTGACAGCAAGTGTATCTTCATCAAATTGGAGTGAAGGTTTGCCTTCACTTTTGGTTACTAATGAAGGTATGGTAGCTTATGTTGACTCTAGTCCTCCACAGTTCTATTATAACAAGACTGTTAGAGGCATGAAAAATAATACAGAACCAAGTTATATTCAATTCAGGAATGAAAGCCTTGCTCTGTTCATACCTACTGCTGCGCCAAATGATACAGATTCAGTGATTTCGATTCCTGCAGCATTGTCTTCTCAGTTCATGAAGTTGGACCCCGATGGTCATTTGAGAGTTTATGAGTGGAGAGAATCTGAATGGAAGGAAGTAGCTGATCTCCTGCAAACCAATGAAGGCAATTGTGAATATCCATTGTCCTGTGGAAAATATGGAATTTGTTCAGACGAGCAGTGCAGCTGTCCTGGAGATTCAAGTAATGCGGCAAAGTACTTCAGGCCAGTAGATGATCGGCTACCCAATCTTGGATGTTCTGAAATCACTTCCATTTCTTGCTTATCTTCCCAATATTACAGTCTTATGGAGCTTGACAACTACAGATACTCTACTTTCAGAGAGGACACTGTATACACAGATATGGAGAATTGCAAACAGGCTTGCTTGAAGAACTGTTCATGCAAAGGCGCTAGATTTCTATATGATTGGAATTCTTCCAATGGGAATTGCTACTTATTGTCTGAAGTTTTTTCACTCATAAGAAATTATGGGAAACATGAAGAAACATATGTGAACTCCACCGTACTTCTTAAAGTGGTGGACTCTCCAATTGAAAATAATACAGAACAAGTTGGAAGCAAAGCTGGGAAGAAAACAGGGCATGTTCCAATCATAATTGGGTCGAGTCTTGGAGCTTTCTTTGGTGTGCTTATCTTAATTGTCACTTGCCTGTTTCTTTTCAGGAAGAAAAATAATACCATGGAAGTTGAGGAGGATTATCTAGATCAGGTATCAGGAATGCCCACTAGATTCTCTTATGGAGGCTTGAAAGCTGCAACTGAAAATTTTAGTCGGAAGCTTGGGGAAGGAGGATTTGGGTCAGTCTATGAAGGCACATTGGGCAATGGTGTCAAGGTTGCAGTGAAGCTACTTGAAGGTTTAGCCCAAGTAAAGAAATCATTTTTAGCAGAAGTTGAGACAATAGGCAGCATTCACCATGTCAATTTGGTAATACTAATTGGATTTTGTGCTGAAAAATCACATAGGCTCTTAGTCTATGAGTACATGTGCAATGGATCCTTGGATAGATGGATCTTCCACAAAAACCAAGACCTTGCTCTTGGTTGGCAATCCAGAAGAAAGATCATCCTTGACATAGCCAAGGGACTCTCCTACCTCCATGAAGAATGCACAAAGAAAATATTTCACTTGGATATTAAGCCCCAAAACATCCTTTTGGATGAACACTTCAATGCAAAAGTTTCTGATTTTGGCTTATCCAAGCTTATAGACAGGGACCAAAGTCAAGTTGTAACAACAATGAGGGGAACACCTGGTTATTTAGCTCCTGAGTGGTTGAGTGCAGTAATCACAGAAAAAGTGGATGTTTATAGCTTTGGTGTTGTGGTATTGGAAATCTTGTGCGGGCGGAAAAACATAGACCGGTCTCGGCCTGAGGAAGATATGCATTTACTGAGTATTTTCAAGAGGAAGGCACAAGAGGAGCAGCTTTTGGACATGGTTGATAAACACCGTACTGAGGAGATGCAATTACATGGAACAGAAGTAGTGAAGATGATGAGAGTGGGAGCATGGTGCCTACAAAGTGATTTTGCTAAGAGACCTTACATGTCCATGGTAGTGAAAGCTCTGGAGGGTTTGGTCGATGTTGATGAGAACCTGGATTATAGCTTCTCACCTTTGCCACTGCCTGGATCCTTAACAGTTGTTGGTCCCAAGGAAGGTGTTGCCAGTTCTAGTACTACTCCATTACTGGCATCTGTTTTATCAGGGCCAAGCTTACAGCCAAGCTTAGCCGCAGATAACTGGACTGAAGGTCTGTTATCACTTTCGGTTACGAATCAAGCTCTGGTAGCTTATGTACTGTCCAATCCTCCTCAATTCTATTATCGTCTTGAGGGCTCGGATATAGACACAAAAGACGATCCTTTACATGGGGATTGCTGCTTTCTATCTGAGGTCTTTTCATTGATGACCACTGATCGGGGTGATATTAAGTCATTCACGTTCCTTAAAGTGGCGATTTCTCCTATTGAAAGGATAAGGGAGCCCGTTGGAAACATAATTCAGAAGAAAAAAGGGCATGCTAGAGTTATAGTCGTATCAAGTCTTGCAGCTTTCTTTGGTGTCTTTATTTTTATGACCACTTGCTTCTTTCTTTTCAGAAAGAAAAAGGATTCTATTGAATTTGAGGAGGATTACCTATATCAGGTATCAGGAATGCCCACTAGATTCTCCTTCCAAGACTTGAAATCTACAACACAAAACTTTAGTTGCAAGCTTGGGGAAGGAGGATTCGGGTCAGTCTATGAAGGCACTTTGAGCAATGGTGCCAAAGTTGCAGTGAAGCGTCTTGAAGGTTTAGCTCAAGTAAAGAAATCATTCTCAGCTGAAGTTGAGACGATAGGCAGCATTCACCATGTCAATTTGGTAAGACTGATGGGGTTTTGTGCTGAAAAATCACATAGGCTCTTAGTCTATGAGTACATGTGTAATGGGTCCTTGGATAAATGGATCTTCCACAAAAACCAACATCTTTCTCTTGGTTGGGAATCCAGAAGAAAGATCATCCTTGACATAGCGAAGGGACTAGCCTATCTCCATGAAGAATGCAGGCAGAAGATATTTCACTTGGACATCAAACCCCAAAACATCCTTTTGGATGAACACTTCAATGCAAAAGTTTCCGATTTCGGATTGTCAAAACTGACTGACAAGGACCAAAGCCAAGTTGTAACAACAATGAGGGGGACCCCGGGTTACTTGGCTCCCGAATGGTTGAGCTCAGTTATCACAGAAAAAGTGGACGTCTACAGCTTTGGCGTTGTGTTGTTAGAAATTCTGTGTGGGCGAAGAAATGTAGACCGATCTCAACCTGAAGAAGATATGCATTTACTCGGTATTTTCAGAAGGAAGGCAAATGAAGGACAAGTGTTGGATATGGTTGATAAAAACAGTGAGGATATGCAGAGACATGGAGCAGATGTTTTGGAGCTGATGAAGGTTGCTGCATGGTGCCTACAAAATGATTATGCCACGAGGCCTTCCATGTCCGTGGTGGTGAAGGTCTTGGAGGGTTTGGTTGATGTTGAAGATGACCTGGATTACAATTTTTCGCATTCACCATTACCTAGGGGCATTGCTCACAAGGTTGCTACTGCTACTCCAATCATGCCATCAACTTTAACAGGACCTAGGTAA 3966 0.4188 MGLYRMESSSVSALLFSLLLISCFPLTDAQYIQYPSNANLSSSWTNKIGEVISTNSSEYAVPQPILLRETTGSGFICGFYCYIGSDACFFGVLIFQNMDLPELVWSANRNNPFRINATSTLELTEGGDLTLEDADGTLIWSTNTSGKSIAGLNLTEAGNLVLFDQNNNTVWQSFDYPTDCLVPSQKLVSGKELTASVSSSNWSEGLPSLLVTNEGMVAYVDSSPPQFYYNKTVRGMKNNTEPSYIQFRNESLALFIPTAAPNDTDSVISIPAALSSQFMKLDPDGHLRVYEWRESEWKEVADLLQTNEGNCEYPLSCGKYGICSDEQCSCPGDSSNAAKYFRPVDDRLPNLGCSEITSISCLSSQYYSLMELDNYRYSTFREDTVYTDMENCKQACLKNCSCKGARFLYDWNSSNGNCYLLSEVFSLIRNYGKHEETYVNSTVLLKVVDSPIENNTEQVGSKAGKKTGHVPIIIGSSLGAFFGVLILIVTCLFLFRKKNNTMEVEEDYLDQVSGMPTRFSYGGLKAATENFSRKLGEGGFGSVYEGTLGNGVKVAVKLLEGLAQVKKSFLAEVETIGSIHHVNLVILIGFCAEKSHRLLVYEYMCNGSLDRWIFHKNQDLALGWQSRRKIILDIAKGLSYLHEECTKKIFHLDIKPQNILLDEHFNAKVSDFGLSKLIDRDQSQVVTTMRGTPGYLAPEWLSAVITEKVDVYSFGVVVLEILCGRKNIDRSRPEEDMHLLSIFKRKAQEEQLLDMVDKHRTEEMQLHGTEVVKMMRVGAWCLQSDFAKRPYMSMVVKALEGLVDVDENLDYSFSPLPLPGSLTVVGPKEGVASSSTTPLLASVLSGPSLQPSLAADNWTEGLLSLSVTNQALVAYVLSNPPQFYYRLEGSDIDTKDDPLHGDCCFLSEVFSLMTTDRGDIKSFTFLKVAISPIERIREPVGNIIQKKKGHARVIVVSSLAAFFGVFIFMTTCFFLFRKKKDSIEFEEDYLYQVSGMPTRFSFQDLKSTTQNFSCKLGEGGFGSVYEGTLSNGAKVAVKRLEGLAQVKKSFSAEVETIGSIHHVNLVRLMGFCAEKSHRLLVYEYMCNGSLDKWIFHKNQHLSLGWESRRKIILDIAKGLAYLHEECRQKIFHLDIKPQNILLDEHFNAKVSDFGLSKLTDKDQSQVVTTMRGTPGYLAPEWLSSVITEKVDVYSFGVVLLEILCGRRNVDRSQPEEDMHLLGIFRRKANEGQVLDMVDKNSEDMQRHGADVLELMKVAAWCLQNDYATRPSMSVVVKVLEGLVDVEDDLDYNFSHSPLPRGIAHKVATATPIMPSTLTGPR* 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0142 1321 Pfam Protein kinase domain 1015 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0142 1321 Pfam Protein kinase domain 532 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0142 1321 FunFam Os04g0303100 protein 93 228 - -
Vvi12g0142 1321 SMART serkin_6 529 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0142 1321 SMART serkin_6 1010 1279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0142 1321 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 75 175 - -
Vvi12g0142 1321 CDD STKc_IRAK 535 802 - -
Vvi12g0142 1321 ProSiteProfiles PAN/Apple domain profile. 361 443 IPR003609 -
Vvi12g0142 1321 Gene3D Transferase(Phosphotransferase) domain 1 604 812 - -
Vvi12g0142 1321 Gene3D Transferase(Phosphotransferase) domain 1 1085 1294 - -
Vvi12g0142 1321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vvi12g0142 1321 Gene3D Phosphorylase Kinase; domain 1 501 603 - -
Vvi12g0142 1321 ProSitePatterns Protein kinases ATP-binding region signature. 1016 1038 IPR017441 GO:0005524
Vvi12g0142 1321 CDD STKc_IRAK 1016 1282 - -
Vvi12g0142 1321 ProSiteProfiles Protein kinase domain profile. 529 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0142 1321 SMART blect_4 56 177 IPR001480 -
Vvi12g0142 1321 SUPERFAMILY Protein kinase-like (PK-like) 991 1280 IPR011009 -
Vvi12g0142 1321 FunFam serine/threonine-protein kinase PBS1-like 978 1084 - -
Vvi12g0142 1321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1130 1142 IPR008271 GO:0004672|GO:0006468
Vvi12g0142 1321 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi12g0142 1321 SUPERFAMILY Protein kinase-like (PK-like) 512 800 IPR011009 -
Vvi12g0142 1321 FunFam S-receptor-like kinase 5 604 808 - -
Vvi12g0142 1321 FunFam S-receptor-like kinase 5 1085 1288 - -
Vvi12g0142 1321 Gene3D - 92 221 - -
Vvi12g0142 1321 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 807 - -
Vvi12g0142 1321 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Vvi12g0142 1321 CDD B_lectin 70 177 IPR001480 -
Vvi12g0142 1321 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 179 IPR036426 -
Vvi12g0142 1321 Gene3D Phosphorylase Kinase; domain 1 976 1084 - -
Vvi12g0142 1321 ProSiteProfiles Bulb-type lectin domain profile. 56 175 IPR001480 -
Vvi12g0142 1321 Pfam D-mannose binding lectin 103 194 IPR001480 -
Vvi12g0142 1321 FunFam serine/threonine-protein kinase PBS1-like 497 603 - -
Vvi12g0142 1321 ProSiteProfiles Protein kinase domain profile. 1010 1283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0142 Vvi-Chr12 2172268 2184432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0142 485 810 Receptor kinase-like Gene Family AT5G20050 42.135 2.10e-80 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0142 Pkinase 7.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0142 - - vvi:100257381 1695.25