Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0137 ATGTTGATGCCAATCCTCCATATGACGAGCACTAGAAATGCAGGTTTTGTATGTGGCTTCTACTGCAATTATGAGTGTGGTGGCTACCTGTTTGCGGTCCTAATATTCCCATACGGAAGTATTGATTCTTCAGGCAATGATCCAGTGGTAGAATTCCCAAAAGTAGTGTGGTCTGCAAATAGAAACAATTTGGTTGGAGCTAATGCAACATTGCAGCTCACAGGAGAAGGAGATTTGATATTGAAAGAAGCAAATGGCACTGTAGTTTGGTCAACGAGTACGTCTGGTGAGTCTGTTGTTGGTTTGAGATTGACCAAGACAGGAAACCTCATATTGTTTGACAGCAATAATACTTCTGTTTGGCAGTCTTTTGATCACCCAACAGACAGTCTCATTCCAGGCCAGACATTGGTTTCCGGGCAGAAAATGATTGCTAGTGTTTCAGAAAAAAATTGGTCTGAAGGTTTTCTTTCATTTTATGCTACCAGTGAAGGTATTGCTGCTTGTGTCGGGACCACTCCACCTCTGGCATACTTTTTCATGCGTGTGGGTAACACTGGAAGTATAAATGTTTCATTCAGTAAAAGGGGTCTCTTTCTATCTTCAGACGAGCCAATTTGGGAGTTTCCTACTGCATCTTTTGCTCGGTACATCAAGTTGGAACCGACAGGGCAATTGAGATTTTATGAGTGGATTAAAAATAGCTGGAGGGCTTTGCTTTTTCCCTTGCTAAGGGACCTTGATTGTCTATACCCTATGACATGTGGAAAATACGGAATTTGCTCAAATGGGCAGTGCAGTTGTCCCAAACCAGCTGACGGAGAAACAAGCTATTTTAGGCAAATATCTTATAACGAACCCCATCTTGGGTGTTCTGAAATTACTCCCTTATCTCGTGAAGCTTCTCATTATCACAGTCTTCTTGAGCTCAAGGAAACTACATCTTTTTCTTTTGCCCCCGAACTTGATGCCAGCACCGATATTGAAAGTTGCAAGCGTGCCTGTCTGAAGAATTATTCCTGCAAAGCTGCTGTGTTTCTGACTGCTGCAGATAACAGACTTTGCTATCTCCCATCTGAAATCTTTTCACTGATGAATATAGAAGTGTATTCTACATTATTGAATTCGACTACATTCCTTAAGGTGCAGAACGTCCCAAAAATTGAGTCTCCTCCAGCAGTCACTGATCTCATTCCTGATTCTCCCCCACCCTCAAAAAAGATTTCAGTTATACTGTTATTAAGTTTAGAAGCTTTCTTGTGCCTGTTCCTTGCTGTTATGGCATGCTATTTTCTATCTTTGGGTTTCAAAGATGCCAAGGAAGATGAGGAGGATTATCTGCACCAAGTACCCGGAATGCCTACTAGGTTCTCTCATGAAATCTTGGTAGTTGCAACTAAAAATTTTAGTCAAAAGCTTGGTAAAGGAGGATTTGGTTCAGTCTTCAAAGGGATTCTGAGCGATGGAACCAAGGTTGCAGTGAAGTGTCTGGATGTTTTTTGTCAAGCTAAGAATTCCTTCTTAGCTGAGGTTGAGACAATAGGTGGCATTCACCATATGAACTTGGTAAGACTGGTCGGATACTGTGTCAAGAAATCAAAAAGGCTCCTAGTTTATGAATATATGTACAATGGGTCCTTGGACAAGTGGATCTTTGACAGAAGCTCGGGGCTTGCTCTTGACTGGCAAACCAGAAGGAAGATCATACTCAACATAGCAAGGGGTTTAGCTTATCTCCATGAAGAATGCCAAAAGAAAATAGTGCACTTGGATATTAAACCCCAAAACATCCTTTTAGATGAAAATTTCAATGCAAAAGTTTCTGATTTTGGATTGTCCAAGCTAATTGACAGGGACCAGAGCCAAGTGGTAACGACCTTGAGAGGAACTTTGGGGTATTTGGCTCCGGAATGGTTCAGCTCTGCAATTACAGAAAAAGTAGATGTGTATAGCTTTGGTGTTGTGACCTTGGAAATTTTGTGTGGACGGAAAAATTTGGATCGCTCTCAGCCTGAGGGAGATACGCATTTGTTATGTCTTTTTAAACAAAGGGCAGAGGAAGATCAACTGTTGGATTTGGTTGATAAGAACAGTGAGGATATGCAGGCCCACGGAGCAGAGGTTGTGGAGATGATGAGGCTTGCTGCATGGTGTTTACAAGGTGAGGTCACTAAGAGGCCTTCCATGTCCGTGGTGGTAAAGGTCTTGGAGGGGGTGATCAATGTTGAAGGTAATCTGGAGTACAACTTCTTTTATCCAGCAGTCCCAATAGGGACTGAAGCGGTTGGTCATAGGGAGAATAATGTTATCATTGCCTCTCCCCTATTGCCATCAGTTCTATCGGGTCCCAGATAA 2355 0.4225 MLMPILHMTSTRNAGFVCGFYCNYECGGYLFAVLIFPYGSIDSSGNDPVVEFPKVVWSANRNNLVGANATLQLTGEGDLILKEANGTVVWSTSTSGESVVGLRLTKTGNLILFDSNNTSVWQSFDHPTDSLIPGQTLVSGQKMIASVSEKNWSEGFLSFYATSEGIAACVGTTPPLAYFFMRVGNTGSINVSFSKRGLFLSSDEPIWEFPTASFARYIKLEPTGQLRFYEWIKNSWRALLFPLLRDLDCLYPMTCGKYGICSNGQCSCPKPADGETSYFRQISYNEPHLGCSEITPLSREASHYHSLLELKETTSFSFAPELDASTDIESCKRACLKNYSCKAAVFLTAADNRLCYLPSEIFSLMNIEVYSTLLNSTTFLKVQNVPKIESPPAVTDLIPDSPPPSKKISVILLLSLEAFLCLFLAVMACYFLSLGFKDAKEDEEDYLHQVPGMPTRFSHEILVVATKNFSQKLGKGGFGSVFKGILSDGTKVAVKCLDVFCQAKNSFLAEVETIGGIHHMNLVRLVGYCVKKSKRLLVYEYMYNGSLDKWIFDRSSGLALDWQTRRKIILNIARGLAYLHEECQKKIVHLDIKPQNILLDENFNAKVSDFGLSKLIDRDQSQVVTTLRGTLGYLAPEWFSSAITEKVDVYSFGVVTLEILCGRKNLDRSQPEGDTHLLCLFKQRAEEDQLLDLVDKNSEDMQAHGAEVVEMMRLAAWCLQGEVTKRPSMSVVVKVLEGVINVEGNLEYNFFYPAVPIGTEAVGHRENNVIIASPLLPSVLSGPR* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0137 784 ProSitePatterns Protein kinases ATP-binding region signature. 473 495 IPR017441 GO:0005524
Vvi12g0137 784 Gene3D Transferase(Phosphotransferase) domain 1 542 748 - -
Vvi12g0137 784 FunFam S-receptor-like kinase 5 542 745 - -
Vvi12g0137 784 Gene3D Phosphorylase Kinase; domain 1 435 541 - -
Vvi12g0137 784 FunFam Os04g0303100 protein 44 178 - -
Vvi12g0137 784 SMART serkin_6 467 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0137 784 CDD STKc_IRAK 473 738 - -
Vvi12g0137 784 Pfam D-mannose binding lectin 55 140 IPR001480 -
Vvi12g0137 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 53 168 IPR036426 -
Vvi12g0137 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Vvi12g0137 784 ProSiteProfiles Protein kinase domain profile. 467 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0137 784 Gene3D - 42 164 - -
Vvi12g0137 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 16 125 - -
Vvi12g0137 784 FunFam serine/threonine-protein kinase PBS1-like 436 541 - -
Vvi12g0137 784 SUPERFAMILY Protein kinase-like (PK-like) 449 737 IPR011009 -
Vvi12g0137 784 ProSiteProfiles Bulb-type lectin domain profile. 1 125 IPR001480 -
Vvi12g0137 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 744 - -
Vvi12g0137 784 Pfam Protein kinase domain 470 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0137 784 PIRSF SRK 7 756 IPR024171 GO:0004674
Vvi12g0137 784 SMART blect_4 9 127 IPR001480 -
Vvi12g0137 784 CDD B_lectin 53 127 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0137 Vvi-Chr12 2121826 2124180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0137 443 742 Receptor kinase-like Gene Family AT5G20050 44.620 3.31e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0137 Pkinase 2.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0137 - - vvi:100253956 1557.73