Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0136 ATGGCAGCAAATAAAGAACTACTTGATTCGACCGTATTCCTTAAGGTGCAAAACCTTCCAAAAAAGCCCAAGGCTCCTTCGCCAGACATTAATCGTCCCCTTGTCCCTCCTCCTCCCTCAAATACAGGGAGCGAGATTATAGTCATACTGGTATCCTGCTTTGCAGCTTTCTTTGTTCTATTTCTTACCGTCATGACAAGGCAATCTCTTTCTCTGAATAGATACGATGCCAAGGAAGATGAGGAGGATTATCTCCGCCAAGTACCAGGGTTGCCTACTAGATTCTCTTATGAAGTCTTGGTAGAGGCAACTGAAAATTTTAGTCAGAATCTTGGAAAAGGAGGATTTGGTTGTGTCTTTGAAGGGATTCTGAGTGATGGCACCAAAATTGCAGTCAAGTGTCTCAATGGTTTTGCTCAAACTAGAGATTCGTTCTTAGCCGAGGTTGAGACAATAGGCAGCATTCACCATCTCAATTTGGTAAAACTAATTGGATACTGCGCCAGTAAATCAAATAAGTTCTTAGTTTATGAATATATGTGTAATGGATCCTTAGATAAATGGCTCTTCCACAGAAACCAAGAGCTTGCCCTTGACTGGCAAACCAGAAGGAAGATCATCCTGGATATAGCAAAGGGTCTAACCTATCTCCACGAAGAATGCCAAAAGAAAATAGTACACTTAGACATTAAACCCCAGAATATCCTTTTGGATAAAAATTTCAATGCAAAAGTTTCTGATTTTGGTCTGTCCAAGATAATGGACAGGGACCAAAGCCAAGTTGTGACGACATTGAGAGGAACTTTGGGGTATTTGGCTCCTGAATGGTTCAGCTCTGCAATCACAGAAAAAGCAGATGTATATAGCTTTGGTGTTGTGACCTTGGAAATTTTGTGTGGACGAAAAAATCTGGATCACGCTAGGCCTGAGAAAGATATGCATTTGTTGAGTCCTTTCAAGCTGAAGGCAGAGGAGGGAGGACTGTCAGATTTGGTTGACAAGCATAGCGAGGATATGCAGGTACATGGAGCAGAGGTTGTGGAGATGATGAGAGTTGCTGCATGGTGTTTACAAAGTGACATCACTAGGAGGCCTTCCATGTCAGTGGTGGTTAAGGTCTTGGAGGGAGTGATAGCTGTTGAGGATAATCTGGACTACAATTTTTTCAATCCACCAGCCCAAAGAGGGATGGAAGCAGTTGGCTGCCAAGAGTTTGTCTTTGCCTCTCCACTATCTTCATCAGTCCTATCAGGACCCAGGTAG 1263 0.4291 MAANKELLDSTVFLKVQNLPKKPKAPSPDINRPLVPPPPSNTGSEIIVILVSCFAAFFVLFLTVMTRQSLSLNRYDAKEDEEDYLRQVPGLPTRFSYEVLVEATENFSQNLGKGGFGCVFEGILSDGTKIAVKCLNGFAQTRDSFLAEVETIGSIHHLNLVKLIGYCASKSNKFLVYEYMCNGSLDKWLFHRNQELALDWQTRRKIILDIAKGLTYLHEECQKKIVHLDIKPQNILLDKNFNAKVSDFGLSKIMDRDQSQVVTTLRGTLGYLAPEWFSSAITEKADVYSFGVVTLEILCGRKNLDHARPEKDMHLLSPFKLKAEEGGLSDLVDKHSEDMQVHGAEVVEMMRVAAWCLQSDITRRPSMSVVVKVLEGVIAVEDNLDYNFFNPPAQRGMEAVGCQEFVFASPLSSSVLSGPR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0136 420 SUPERFAMILY Protein kinase-like (PK-like) 88 375 IPR011009 -
Vvi12g0136 420 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 383 - -
Vvi12g0136 420 FunFam serine/threonine-protein kinase PBS1-like 73 179 - -
Vvi12g0136 420 CDD STKc_IRAK 111 376 - -
Vvi12g0136 420 Gene3D Transferase(Phosphotransferase) domain 1 180 385 - -
Vvi12g0136 420 Gene3D Phosphorylase Kinase; domain 1 69 179 - -
Vvi12g0136 420 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0136 420 FunFam S-receptor-like kinase 5 180 383 - -
Vvi12g0136 420 SMART serkin_6 105 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0136 420 Pfam Protein kinase domain 108 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0136 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vvi12g0136 420 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0136 Vvi-Chr12 2117108 2118370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0136 81 382 Receptor kinase-like Gene Family AT5G20050 43.082 7.79e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0136 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0136 - - vvi:109123521 842.417