Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0134 ATGCCAACTTGGTGCCTCATTATCAATGGCTTCGTGTTTGCTGTTCTCATATTCCCAAATCATAATGCAACTTATGACAGTATCCTGCGGACAGATGAGATGAAAGTAGTGTGGTCGGCTAACAGAAACAGTTTGGTTAGTAAAAATGCAACCTTGCAACTTACTGAACAAGGAGATTTGGTATTGAAAGAAGCTGATGGCACCACTGCAGTTTGGTCTACAAACACATGTGGTAAGTCTGTGGTTGGCTTAAACTTGACTGAGACAGGGAACCTGATGCTGTTCGACAGCAATAATGAGACGGTCTGGCAGTCTTTTGATCATCCAACAGACAGTCTACTTCCAGAGCAGAGATTGGTTTCTGGGCAGAAACTCCTTACAGCCAGCTTAGCCACAGATAACTGGACTGAAGGTATGTTATCACTTTCCGTTACTAATGAAGCTCTGGTAGCTTATGTAGAGTCCAATCCTCCTCAGATCTATTATCTTCTTGAGGGCTCGGATACAGACACAAAAGGTAAAACAAAACAAAATTATATCTTACTCGGGAATGAAAGCCTCGATGGGTTCATACATGGTGCTGACCCAAACTATCCAGATTCAAGGATTTTCATTGCTACAGACTTGTCTGCTCAGTTCATCAAACTGGGGCCGGATGGTCATTTGAGAGCCTACGGGTGGAAAAATAATAGCTGGGAGGCGGCTGATCTTCTGACTGATTGGTTATCATTTCCAAATCATCTAAGTGATGTAGATGATTGTCAATACCCGCTGGTGTGCGGGAAATATGGCATTTGCTCAGAAAGACAGTGTAGCTGTCCCCCACCATCTGCTAATGGAACAAACTATTTCAGGCCAGTAGATGACAACCTACCCAGTCATGGATGCTATACAACTAAACCCATTGCTTGCGGCTCTTCTCAATATCATCATCTTCTTGAGCTTCAACACGTAGGTTACTTTGCCTTCAGTTCTGACATTAGCAGTACAAACGTAGAAAATTGCAAGCAGGCCTGTTTGAACAACTGTTCATGCAAAGCTGCTCTTTTTCAATATACAGACGATCCTTTAGATGGGGATTGCTGCCTTCTATCTGAGGTCTTTTCATTGATGACCACTGATCGGGGTGATATTAAGTCATCCACGTTCCTTAAAGTGGCGATTTCTCCTATTGATATTGGAAACATGAAGAAAAAAGGGCATGCTAGAGTTATACTCGTATCAAGTCTTGCAGCTTTCTTCGGTGTCTTTATTTTTATGACCACTTGCTTCTTTCTTTTCAGAAAGAAAAAGGATTCTATTGAATTTGAGGAGGATTACCTAGATCAGGTATCAGGAATGCCCACTAGATTCTCCTTCCAAGACTTGAAATCTACAACACAAAACTTTAGTTGTAAGCTTGGGGAAGGAGGATTCGGGTCAGTCTATGAAGGCACTTTGAGCAATGGTGTCAAAGTTGCAGTCAAGCATCTTGAAGGTTTAGCTCAAGTAAAGAAATCATTCTCAGCTGAAGTTGAGACGATAGGCAGTATTCACCATGTCAATTTGGTAAGACTGATTGGATTTTGCGCTGAAAAATCACATAGGCTCTTAGTCTATGAGTACATGTGTAATGGGTCCCTGGATAAATGGATCTTCCACAAAAACCAACATCTTTCCCTTGGTTGGGAATCCAGAAGAAAGATCATCCTTGACATAGCGAAGGGACTAGCCTATCTCCATGAAGAATGCAGGCAGAAGATATTTCACTTGGATATCAAACCCCAAAACATCCTTTTGGATGAACACTTGAATGCAAAAGTTTCCGATTTCGGATTGTCAAAACTGATTGACAAGGACCAAAGCCAAGTTGTAACAACAATGAGGGGGACCCCGGGTTACTTGGCTCCCGAATGGTTGAGCTCAGTTATCACAGAAAAAGTGGACGTCTACAGCTTTGGCGTTGTGTTGTTAGAAATTCTGTGTGGGCGAAGAAATGTAGACCGATCTCAACCTGAAGAAGATATGCATTTACTCGGTATTTTCAGAAGGAAGGCAAATGAAGGACAAGTGTTGGATATGGTTGATAAAAACAGTGAGGATATGCAGAGACATGGAGCAGAAGTTATGGAGCTGATGAAGGTTGCTGCATGGTGCCTACAAAATGATTATGCCAGGAGGCCTTCCATGTCCGTGGTGGTGAAGGCTTTGGAGGGTTTGGTTGATATTGAAGATGACCTGATTTACAATTTTTCGTATTCACCATTACCTAGGGGCATTGCTCACAAGCTACAGACGGGCCACAGCAATGAAGTTGACATGGGTGATGCTGCTGGTGATATTGCTGGCTCACTCAAATCAAATATTAATGCAAGATATGTTATTCTTGAGGAGGTGGATGAGCAAGAGGATAGCACTTGA 2400 0.4242 MPTWCLIINGFVFAVLIFPNHNATYDSILRTDEMKVVWSANRNSLVSKNATLQLTEQGDLVLKEADGTTAVWSTNTCGKSVVGLNLTETGNLMLFDSNNETVWQSFDHPTDSLLPEQRLVSGQKLLTASLATDNWTEGMLSLSVTNEALVAYVESNPPQIYYLLEGSDTDTKGKTKQNYILLGNESLDGFIHGADPNYPDSRIFIATDLSAQFIKLGPDGHLRAYGWKNNSWEAADLLTDWLSFPNHLSDVDDCQYPLVCGKYGICSERQCSCPPPSANGTNYFRPVDDNLPSHGCYTTKPIACGSSQYHHLLELQHVGYFAFSSDISSTNVENCKQACLNNCSCKAALFQYTDDPLDGDCCLLSEVFSLMTTDRGDIKSSTFLKVAISPIDIGNMKKKGHARVILVSSLAAFFGVFIFMTTCFFLFRKKKDSIEFEEDYLDQVSGMPTRFSFQDLKSTTQNFSCKLGEGGFGSVYEGTLSNGVKVAVKHLEGLAQVKKSFSAEVETIGSIHHVNLVRLIGFCAEKSHRLLVYEYMCNGSLDKWIFHKNQHLSLGWESRRKIILDIAKGLAYLHEECRQKIFHLDIKPQNILLDEHLNAKVSDFGLSKLIDKDQSQVVTTMRGTPGYLAPEWLSSVITEKVDVYSFGVVLLEILCGRRNVDRSQPEEDMHLLGIFRRKANEGQVLDMVDKNSEDMQRHGAEVMELMKVAAWCLQNDYARRPSMSVVVKALEGLVDIEDDLIYNFSYSPLPRGIAHKLQTGHSNEVDMGDAAGDIAGSLKSNINARYVILEEVDEQEDST* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0134 799 Gene3D - 23 164 - -
Vvi12g0134 799 SMART serkin_6 461 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0134 799 CDD B_lectin 25 109 IPR001480 -
Vvi12g0134 799 CDD PAN_AP_plant 301 387 - -
Vvi12g0134 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 34 162 IPR036426 -
Vvi12g0134 799 Pfam PAN-like domain 313 364 IPR003609 -
Vvi12g0134 799 ProSiteProfiles Bulb-type lectin domain profile. 1 107 IPR001480 -
Vvi12g0134 799 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 738 - -
Vvi12g0134 799 FunFam Os04g0303100 protein 26 161 - -
Vvi12g0134 799 FunFam serine/threonine-protein kinase PBS1-like 429 535 - -
Vvi12g0134 799 Gene3D Phosphorylase Kinase; domain 1 427 535 - -
Vvi12g0134 799 SMART blect_4 6 109 IPR001480 -
Vvi12g0134 799 ProSiteProfiles PAN/Apple domain profile. 304 387 IPR003609 -
Vvi12g0134 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Vvi12g0134 799 ProSiteProfiles Protein kinase domain profile. 461 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0134 799 CDD STKc_IRAK 467 733 - -
Vvi12g0134 799 Pfam D-mannose binding lectin 36 121 IPR001480 -
Vvi12g0134 799 Pfam Protein kinase domain 466 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0134 799 Gene3D Transferase(Phosphotransferase) domain 1 536 743 - -
Vvi12g0134 799 ProSitePatterns Protein kinases ATP-binding region signature. 467 489 IPR017441 GO:0005524
Vvi12g0134 799 PIRSF SRK 8 770 IPR024171 GO:0004674
Vvi12g0134 799 FunFam S-receptor-like kinase 5 536 739 - -
Vvi12g0134 799 SUPERFAMILY Protein kinase-like (PK-like) 444 731 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0134 Vvi-Chr12 2098119 2114319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0134 417 738 Receptor kinase-like Gene Family AT5G20050 41.643 2.09e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0134 Pkinase 6.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0134 - - vvi:104880834 1413.67