LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0132	ATGGAGGCCTCTCAGAGCACTAGTTCCAATTCTCCCCCGCCCTTTCTCACCAAAACCTATGAAATGGTGGATGATCCCATCACCGATTCGATCGTTTCGTGGAGTCAGGCTGGCCACAGCTTTGTTGTTTGGAATCCCCCTGAGTTCGCCAAAGATTTGCTCCCCAAGTACTTCAAGCACAACAACTTTTCCAGCTTTGTCAGGCAGCTGAATACTTATGGTTTCAGGAAGGCTGATCCTGAGCAGTGGGAGTTTGCAAATGAGGAATTCATTAGAGGTCAGAGGCACCTTTTGAAGAACATACATAGACGCAAGCCGATTCATAGCCATTCCACACAAAATCAGGTGGGCTCAGCACCATTACCAGAATCAGAAAAGCAGGAATTTGAGGCTGAAATTGAGAGGCTGAAACATGATAAGGGTGCACTTCTGTCGGAGCTACAGCGGTATAAACAGGAGAATCAGTTCTTTGAGTTTCAAACACAGTCTTTAGGAAAACGAGTGTTTAATATGGAACTCCGGCAAAGGAAAATGATGGCCTACTTAGCGCAAGTATTGCAGAAACCCGGATTTACTTCTAGTCTCATGGCACAGTCAGAAATTCATAACAAAAAGAGAAGGTTATTGATGCCTAATTACCTTTTTAATGAAGCCAATGTTGAAGAGAATATGGTAGTGACTTTCCAGAAAGAAAAGCCGGACACAATTTCTGTTCAAGGGGAGAATGTTGAGATGATTGAGAGTTTGGAATCATCTTTAAATTTTTGGGAGAATTTTCTCTATGGGATTGGTCAAGGCTCAGCAGATGTAATGGATGGTTTTGGAACACTTTCCCAGCCTTCTCCACTCATTATTACAGAAATGCATTCATCATCAGATCCAGACACAAGCACCCAGCCTTGCTCACCTAAATCATATCCGTCATCACCTCATTCCAGGGATATTCACTCATCACCAGAGTTGGCCAGGGCTACAAATCATGCGGACAGCCCTGCTATTTCTTCTATTTATCTCAATATAGATGGTTGTCCTAAATCTTTGAGGATTGATGTCAATTCAGAGCCCACTAATGCTTCTGAGGTTGAGGCCTCAAAAGAATGTGAAGGAGGGACAACTGCTGCTGGGGCAAATGATGTCTTCTGGGCACAGTTCCTGACAGAGACACCTGGTTCATCGGATGCACAGGAGGTCCAGTCAGAACGGAGGGACGCATATGGCGGCAAGGGTGACAGTAAGCCAGATGACCACAGGAAATATTGGTGGGATACAAATAATCTAGATCATCTTACTAAAAAAATGGGTCATCTTACTTCATCTGAAAGAACTTAA	1329	0.4387	MEASQSTSSNSPPPFLTKTYEMVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKADPEQWEFANEEFIRGQRHLLKNIHRRKPIHSHSTQNQVGSAPLPESEKQEFEAEIERLKHDKGALLSELQRYKQENQFFEFQTQSLGKRVFNMELRQRKMMAYLAQVLQKPGFTSSLMAQSEIHNKKRRLLMPNYLFNEANVEENMVVTFQKEKPDTISVQGENVEMIESLESSLNFWENFLYGIGQGSADVMDGFGTLSQPSPLIITEMHSSSDPDTSTQPCSPKSYPSSPHSRDIHSSPELARATNHADSPAISSIYLNIDGCPKSLRIDVNSEPTNASEVEASKECEGGTTAAGANDVFWAQFLTETPGSSDAQEVQSERRDAYGGKGDSKPDDHRKYWWDTNNLDHLTKKMGHLTSSERT*	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0132	442	MobiDBLite	consensus disorder prediction	286	327	-	-
	Vvi12g0132	442	Gene3D	-	7	105	IPR036388	-
	Vvi12g0132	442	SUPERFAMILY	"Winged helix" DNA-binding domain	10	104	IPR036390	-
	Vvi12g0132	442	MobiDBLite	consensus disorder prediction	286	315	-	-
	Vvi12g0132	442	MobiDBLite	consensus disorder prediction	104	124	-	-
	Vvi12g0132	442	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0132	442	Coils	Coil	126	153	-	-
	Vvi12g0132	442	MobiDBLite	consensus disorder prediction	388	416	-	-
	Vvi12g0132	442	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	289	IPR027725	-
	Vvi12g0132	442	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0132	442	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0132	442	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0132	442	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0132	442	FunFam	Heat shock transcription factor 1	8	105	-	-
	Vvi12g0132	442	MobiDBLite	consensus disorder prediction	396	416	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0132	Vvi-Chr12	2054982	2057590	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0132	2	442	HSF	AT4G18880	42.506	1.72e-102	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vvi12g0132		HSF_DNA-bind	1.1e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0132	K09419		-	vvi:100250580	904.049