Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0126 ATGGGAGCTGAACCCATCATTGTCTTTTCAGTTCTCTTTATCTTCTTCACCGTCCCTGGATTCTCAGCCAAGCTCCCAGCAGATGAATTGAAGGCGCTGAAGGTGATTGGGACGAGATTGGGGAAGAGGGATTGGGATTTTGGGAAGGACCCATGTAGTGGAGAAGGGAACTGGAGTTCTGTGAATGAGAAAAAGGGGGTTGAGAGCTCTGTAACTTGTGACTGCACTTTCCACCACAATGCCTCCTGCCATGTAGTAACCATAGCTTTAAAAGCACAAAATTTATCAGGAAGCCTACCACCAGAACTCTCCAAACTTTATCACCTCAAACATCTGGACTTGTCTCGCAACTTATTTAGCGGTTCGATACCTTCCCAATGGGCTACCATGCGTTTGGTCGAACTCTCCTTGATGGGGAACAGGCTATCTGGTCCATTCCCAAAAGTCCTCACCAACATCACCACCCTCAGGAACCTGAGCATAGAAGGGAACCTGTTTTCAGGACCTATTCCTCCAGAGATTGGAAAGTTGATCAGAATAGAAAAAATGGTTCTATCGTCAAATGCCTTCACAGGAGAACTGCCAGTGGCACTTGCCAAGTTGACTAACTTGACTGATATGAGGATAAATGACAATCATTTCTCTGGAAGGATACCTGAGTTCATCGGCAATTGGACACATGTTCAAAAACTGCACATTCAGGGTAGCTCTCTCGAGGGGCCTATTCCTTCAAGCATTTCTGCTCTGACAAGCTTAAGTGATCTGAGGATTAGTGACTTAAAAGGTAGAGGGTCTACTTTTCCACCATTGAGTACCATTGAATCCCTGAAGACATTGGTGCTGAGAAAATGCTTAATACATGGAGAAATTCCAGAATATATAGGGGATATGAAGAAACTGAAGCACTTAGATCTTAGTTTCAATGAGTTGGCTGGTGAAATTCCTACCTCATTTCAGGAACTAGCTAAAACCGATTTCATGTATTTGACAGGGAATATGCTCACTGGACATATACCTGACTGGATCCTAGGAACAAACAAGAATTTTGATCTTTCTTATAACAATTTCACTTGGGATAGTTCAAGTCCGGTTGAATGTCCTCGAGGGAGCGTAAACCTAGTGGAGAGCTACTCATCATCATCAGTTAGACGAAGTATTCATTCATGCCTAAAACAAAACTTTCCATGTTCTGCTTCAAGTAATCAATATCATTATTCCTTGCACATTAATTGTGGTGGAAAAGAAACAAGTATCAATGGTAGCACCAAGTATGAAGCTGACTTAGAACCAACCGGTGCTTCAATGTTTTACTTGGGTCAGAACTGGGCATTCAGCAGCACTGGAAACTTCATGGACAATGATGTTGATGGGGATGCCTATATTGAAGCCAATACTTCTTCCCTTTCCAATGTCTCTGTGCTTGATGTCGAACTTTACAAAAAAGCGCGTGTTTCTCCCCTCTCCCTGACTTATTATGGACTATGTCTTGGAAATGGGAATTACACTGTTAAACTTCACTTTGCAGAGATTATTTTCATAAATGACAAGTCCTTTAACAGCCTTGGGGAGCGTATATTTGATGTGTACATCCAGGGAAAGTTGGTCCTGAAAGATTTTAACATTGAAAAGGAGGCTGGTGGGACTGGCAAGCCCATTATAAAGAACTTCACTGCAGAAGTAACAAGTCACACTTTAAAGGTCCAGTTTTACTGGGCTGGACGAGGGACAACCGGAATCCCCCTGAGAGGATTTTATGGGCCTCTCATATCTGCAATATCAGTGGATCCCAATTTTGAACCTCCTTCCCCTCCTGGAAAAAATTGGGACATTAAAATAGTGGTTGGGGCTGCAGCTGTTGCGGTAGTTCTTGTTCTTCTGACACTGGGTATTTTATGGAGGAAAGGCTGGCTTGGAGGCAAAACATCTGAAGATAAAGAGCTTAGAGGTCTAGACCTGCAAACAGGATTATTTACATTAAGACAAATCAAAGCTGCAACCAAGAACTTTGATGCAGAAAACAAGCTGGGAGAAGGTGGTTTTGGTGCAGTTTTCAAGGGTACATTATCAGATGGAACAGTTATTGCAGTGAAGCAGCTTTCCTCAAAATCTAAGCAAGGAAACCGTGAATTTGTGAATGAAGTAGGGATGATATCTGCACTGCAACACCCAAATCTTGTTAAGCTGTATGGATGTTGTATTGAAGGCAATCAGTTATCGCTGGTATATGAATACATGGAGAACAATAGTCTGTCCCGTGCTCTTTTTGGGCGTGATGCAACATACAAACTGAAATTAAACTGGTCCACCAGACAGAATATATGTGTTGGTATAGCTAGAGGTTTAGCATATCTCCATGAAGAGTCAACATTGAAGATTGTGCATAGAGACATTAAAACTAGTAATGTTTTGCTTGATAAGGACATGAATGCCAAAATATCTGATTTTGGATTAGCAAAGCTAGATGAAGATGATAACACCCACATCAGTACTCGGATAGCTGGAACCATAGGTTATATGGCTCCTGAATATGCAATGCGCGGTTACTTGACTGACAAAGCAGACGTGTACAGCTTTGGAGTTGTGGCACTGGAAATTGTCAGTGGAAAGAGCAACACAAATTATAGACCAAAGGAGGAATTTGTTTATCTTCTTGACTGGGCCTATGTTCTACAGGAGAGAGGAGGCCTATTGGAGTTGGTTGATCCAGACTTAGGTTCCGAATATTCATCTGAACAGGCAATGGTGATGCTGAATGTCGCTCTCCTCTGCACCAATGCATCCCCCACTCTTAGGCCTACAATGTCTCAAGTGGTAAGCATGCTTGAAGGCCGGACTGCAGTTCAGGATCTTCTTTCAGATCCAGGGTTCTCAACCATTAATTCAAAGTATAAGGCCATCAGAAATTTCTGGCAGAACCCAAGTGAAACTCAAAGCATGTCTGTCTATGGCACCTATACTGATTCCTCCGAGACAGTCACAGAAAAAGAAGAGAATAACCGGCTTTTAAGAGTCAGTTTCCATACCTGTCCTGAGTAA 3036 0.4249 MGAEPIIVFSVLFIFFTVPGFSAKLPADELKALKVIGTRLGKRDWDFGKDPCSGEGNWSSVNEKKGVESSVTCDCTFHHNASCHVVTIALKAQNLSGSLPPELSKLYHLKHLDLSRNLFSGSIPSQWATMRLVELSLMGNRLSGPFPKVLTNITTLRNLSIEGNLFSGPIPPEIGKLIRIEKMVLSSNAFTGELPVALAKLTNLTDMRINDNHFSGRIPEFIGNWTHVQKLHIQGSSLEGPIPSSISALTSLSDLRISDLKGRGSTFPPLSTIESLKTLVLRKCLIHGEIPEYIGDMKKLKHLDLSFNELAGEIPTSFQELAKTDFMYLTGNMLTGHIPDWILGTNKNFDLSYNNFTWDSSSPVECPRGSVNLVESYSSSSVRRSIHSCLKQNFPCSASSNQYHYSLHINCGGKETSINGSTKYEADLEPTGASMFYLGQNWAFSSTGNFMDNDVDGDAYIEANTSSLSNVSVLDVELYKKARVSPLSLTYYGLCLGNGNYTVKLHFAEIIFINDKSFNSLGERIFDVYIQGKLVLKDFNIEKEAGGTGKPIIKNFTAEVTSHTLKVQFYWAGRGTTGIPLRGFYGPLISAISVDPNFEPPSPPGKNWDIKIVVGAAAVAVVLVLLTLGILWRKGWLGGKTSEDKELRGLDLQTGLFTLRQIKAATKNFDAENKLGEGGFGAVFKGTLSDGTVIAVKQLSSKSKQGNREFVNEVGMISALQHPNLVKLYGCCIEGNQLSLVYEYMENNSLSRALFGRDATYKLKLNWSTRQNICVGIARGLAYLHEESTLKIVHRDIKTSNVLLDKDMNAKISDFGLAKLDEDDNTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQERGGLLELVDPDLGSEYSSEQAMVMLNVALLCTNASPTLRPTMSQVVSMLEGRTAVQDLLSDPGFSTINSKYKAIRNFWQNPSETQSMSVYGTYTDSSETVTEKEENNRLLRVSFHTCPE* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0126 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
Vvi12g0126 1011 CDD STKc_IRAK 675 943 - -
Vvi12g0126 1011 SMART serkin_6 669 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0126 1011 SUPERFAMILY Protein kinase-like (PK-like) 653 978 IPR011009 -
Vvi12g0126 1011 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Vvi12g0126 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 597 - -
Vvi12g0126 1011 Pfam Malectin domain 406 592 IPR021720 -
Vvi12g0126 1011 Gene3D Ribonuclease Inhibitor 155 222 IPR032675 -
Vvi12g0126 1011 Gene3D Ribonuclease Inhibitor 37 154 IPR032675 -
Vvi12g0126 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 225 372 - -
Vvi12g0126 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 975 - -
Vvi12g0126 1011 Gene3D Phosphorylase Kinase; domain 1 639 744 - -
Vvi12g0126 1011 Gene3D Transferase(Phosphotransferase) domain 1 745 953 - -
Vvi12g0126 1011 Pfam Protein tyrosine and serine/threonine kinase 671 941 IPR001245 GO:0004672|GO:0006468
Vvi12g0126 1011 SUPERFAMILY L domain-like 73 357 - -
Vvi12g0126 1011 Gene3D - 402 596 - -
Vvi12g0126 1011 ProSiteProfiles Protein kinase domain profile. 669 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0126 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vvi12g0126 1011 Gene3D Ribonuclease Inhibitor 223 367 IPR032675 -
Vvi12g0126 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 953 - -
Vvi12g0126 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 31 194 - -
Vvi12g0126 1011 Pfam Leucine rich repeat 275 334 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0126 Vvi-Chr12 1992758 2002443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0126 207 1002 Receptor kinase-like Gene Family AT1G07650 65.878 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0126 PK_Tyr_Ser-Thr 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0126 - - vvi:100252351 1991.85