Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0119 ATGGGCATCAGCAGAATTCTGGGTTGTCTTCTTGGGTGTCATATTCTTTTTATTCCTTTTTCCCTCCCTGTCAATGCCCTAACAGCCTATGACTCTGCTGCCAATCTTTCATCTTCATGGATTAATAATGGGTCTCGAGATATTGGTGTTGATTCTGAAGATTACTCCACGCTAAGGCCAATCTTTCTTGGACAAGGCATCAATGCGAGTTTCGCATGTGGCTTCTACTGCAATTATAATTGTGAAGGTTACCTTTTCGCTATCCTCATATTCCCACCACCCGGAAAATACAATTATCCAGAAGTCCGAAACCCAAAAGTAGTGTGGTCTGCTAATCAGAACTTTCTGGTTAGAGATGATGCAACCTTGCAACTCACGCAAGATGGAGATTTGATCTTGAGAGATGCCGATGGTACTTTAGTTTGGTGCACTTATACATATGGTAAGTCTGTTGTGGGCTTAAACTTGACCGAAACAGGAAACCTGGTGCTGTTTGACAGCAATAACGCATCTGTCTGGCAGTCTTTTGATCATCCAACCGACAGTCTAGTTCCGGGGCAGATTCTGGTTTTGGGTCAGAAACTCATAGCTACTGTATCCAACAAGGATTGGTCACAAGGTTTGATTTCATTGGTTGTCACTGAATATGGTGTGGCTGCTCGTATTGAGTCCAATCCACCCCAGAACTATTTTGCTTTGCGTCTTTATAACAGCAGTAATACAGAACCAAGATATCTCATATTCAAGAATGAAGGCCTCTTTTTCCTCCCCGACACGGCCCTTTTTGAGATTGATAACTCATTTTCTGCTCAGTACATGAAGTTGGAACCCAAAGGTCATTTGACATTTTATGGGTTTGTCAATGACATTTGGAAGGTTTTGTTCAATCCCCTTCTGGGAGAGTTAAACTGTGCATACCCTATGATATGTGGCAAATATGGAGTTTGCTCAAAACAGCAGTGCTTTTGTCCAGGGCCAACTGCAGGAGAAACAAGATATTTCACGCCAGTAAATGATGAGGAACCTGACCTTGGGTGTAAAGAAATCACACCCCTATCTTGCAATGCTTCTCATTATCAGAGTCTTCTTATGCTCAGAAGCACAACGTCCGCGCTTATTCTCCAATTAAATAAGACTGAGATTGGTAATGAAACAGAAAGTGACATTGAAAGTTGCAAGCAGGCCTGTTTAAGTAATTTCTCCTGCAAAGCTGCAGTCTTTTTGTCTGGTGTGGAGAATGGTGGAGCTTGCTATCTACTATCTGAAATATTTTCGCTGATGAAGGATGCTCGTCTACAGGGGTGGACGACATTCATTAAGGTGCAGAATATCTCAAATCCAGGGGAGCCTCCATCTTCCTCAAATCCAGAGGGTCCTCCATCTTCCTCAAATCCAGAGGGTCCTCCATCTTCCTCAAATCCAGAGGGTCCTCAATCTTCCTCAAGTCCAGAGACTATCATTAGGCAGTTGTTGTCTACTTTGGGAGCTTTCGTGGGCCTGGTTTTTATAGTTATTATCATAGGAAGATATCTAATTTTGAAAGGAAAAGACGTCAAGGAAGACGGGGAGGATAAAGATCTGCTCCAAGTACCAGGGATGCCAACTAGATTCTCTCACGAAATCTTGGTAGCGGCCACTGAAAATTTTAGTCGGGAGCTTGGGAAAGGAGGATTTGGTTCAGTCTTTGAAGGGATTCTGACAGATGGAACAAAAGTTGCTGTGAAGTGTATCAATGGTTTATCTCAGACAAAGGATTATTTCTTAGCTGAGGTTGAGACCATAGGCGGCATTCACCATTTGAACTTGGTGAGACTGGTAGGATACTGTGCCAACAAATCAAATAGATGCTTGGTTTATGAATACATGTTTAATGGCTCCTTGGATAAATGGATCTTCCACAGAAACAAAGAGCTTGCTCTTGATTGGCAAACAAGGAGGAAGATCATCCTGGATATAGCAAAGGGTCTATCCTATCTCCACGAAGAATGCAGACAGAAAATCATCCACTTAGATATCAAACCCCAGAACATCCTTTTAGACGAAAGTTTCAATGCAAAAGTTTCTGATTTCGGACTGTCCAAGCTAATGGACAGGGACCAAAGCCAAGTTGTGACAACCTTGAGAGGAACTCCAGGATATATGGCTCCTGAATGGCTGATCTCCGCAATCACAGAAAAAGTGGACGTCTATAGCTTTGGTATTGTGACTCTGGAAATTTTGTGTGGGCGAAGAAATTTGGATCACTCTCAGCCCGAGGAAGATAAATATTTGTTAAGTCTTTTTAAGAGAAAGGCTGAGGAAGATCAGATGTTGGATTTGGTGGATAAGTACAGTGAGGATATGCAGTTACATGGAGAAGAAGCTGTGGAGCTGATGATGCTTGCTGCATGGTGTCTACAAAATGACAATGGTAGAAGGCCTTCTATGTCGATGGTGATCAAGGTCGTGGAGGGGGTGATCGATGTTGAAGATAATCTGGACTATAATTTCTTGAATTCATCAGGACTAGGAGCGACTGAAGCAGTTCATCGGAGGGAGATTAATGTGGGTTTTGCCTCTCCTGTCAATTGTATTAAGAAAGTCTGA 2586 0.4261 MGISRILGCLLGCHILFIPFSLPVNALTAYDSAANLSSSWINNGSRDIGVDSEDYSTLRPIFLGQGINASFACGFYCNYNCEGYLFAILIFPPPGKYNYPEVRNPKVVWSANQNFLVRDDATLQLTQDGDLILRDADGTLVWCTYTYGKSVVGLNLTETGNLVLFDSNNASVWQSFDHPTDSLVPGQILVLGQKLIATVSNKDWSQGLISLVVTEYGVAARIESNPPQNYFALRLYNSSNTEPRYLIFKNEGLFFLPDTALFEIDNSFSAQYMKLEPKGHLTFYGFVNDIWKVLFNPLLGELNCAYPMICGKYGVCSKQQCFCPGPTAGETRYFTPVNDEEPDLGCKEITPLSCNASHYQSLLMLRSTTSALILQLNKTEIGNETESDIESCKQACLSNFSCKAAVFLSGVENGGACYLLSEIFSLMKDARLQGWTTFIKVQNISNPGEPPSSSNPEGPPSSSNPEGPPSSSNPEGPQSSSSPETIIRQLLSTLGAFVGLVFIVIIIGRYLILKGKDVKEDGEDKDLLQVPGMPTRFSHEILVAATENFSRELGKGGFGSVFEGILTDGTKVAVKCINGLSQTKDYFLAEVETIGGIHHLNLVRLVGYCANKSNRCLVYEYMFNGSLDKWIFHRNKELALDWQTRRKIILDIAKGLSYLHEECRQKIIHLDIKPQNILLDESFNAKVSDFGLSKLMDRDQSQVVTTLRGTPGYMAPEWLISAITEKVDVYSFGIVTLEILCGRRNLDHSQPEEDKYLLSLFKRKAEEDQMLDLVDKYSEDMQLHGEEAVELMMLAAWCLQNDNGRRPSMSMVIKVVEGVIDVEDNLDYNFLNSSGLGATEAVHRREINVGFASPVNCIKKV* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0119 861 CDD B_lectin 104 179 IPR001480 -
Vvi12g0119 861 Pfam D-mannose binding lectin 107 191 IPR001480 -
Vvi12g0119 861 Pfam Protein kinase domain 550 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0119 861 CDD STKc_IRAK 553 818 - -
Vvi12g0119 861 ProSitePatterns Protein kinases ATP-binding region signature. 553 575 IPR017441 GO:0005524
Vvi12g0119 861 MobiDBLite consensus disorder prediction 443 483 - -
Vvi12g0119 861 FunFam Os04g0303100 protein 97 230 - -
Vvi12g0119 861 SUPERFAMILY alpha-D-mannose-specific plant lectins 105 181 IPR036426 -
Vvi12g0119 861 MobiDBLite consensus disorder prediction 452 472 - -
Vvi12g0119 861 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 71 177 - -
Vvi12g0119 861 Gene3D Transferase(Phosphotransferase) domain 1 622 832 - -
Vvi12g0119 861 SMART blect_4 52 179 IPR001480 -
Vvi12g0119 861 FunFam serine/threonine-protein kinase PBS1-like 516 621 - -
Vvi12g0119 861 Gene3D Phosphorylase Kinase; domain 1 519 621 - -
Vvi12g0119 861 ProSiteProfiles Protein kinase domain profile. 547 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0119 861 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 68 825 - -
Vvi12g0119 861 FunFam S-receptor-like kinase 5 622 825 - -
Vvi12g0119 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Vvi12g0119 861 ProSiteProfiles Bulb-type lectin domain profile. 52 177 IPR001480 -
Vvi12g0119 861 SUPERFAMILY Protein kinase-like (PK-like) 529 815 IPR011009 -
Vvi12g0119 861 Gene3D - 79 177 IPR036426 -
Vvi12g0119 861 SMART serkin_6 547 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0119 861 PIRSF SRK 57 850 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0119 Vvi-Chr12 1916439 1923051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0119 527 824 Receptor kinase-like Gene Family AT5G20050 45.541 2.33e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0119 Pkinase 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0119 - - vvi:100259197 1646.33