Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0118 ATGGGCCTGAAATTGAATATCGCAACAACCTCTCTTCTGCTATTGCTAGCATCTGCTGCAGAAGTGTCTGGTGATATCATTTTTGACGTTACCAAATATGGTGCCAGGACTGATGGAAACTCCGATATCAGCCAGGCCTTACTTAAAGCTTGGGGAGACGCTTGTTCATCGCCTGTGGCAAGTACAGTTATGATTCCAGATGGGACATATGCGCTGGGGCAAATAATCATCGCAGGCCCTTGCAAGGCTCCTATTAATTTCGTTGTCCAAGGCACTGTGATGGCCCCGGTGGATACCAGCAGGTTCAGGGCTGAAGCTGGTTGGATTACGTTTCAACAAATCGACCAGTTCACATTGTCTGGTGATGGAGTTTTTGATGGTCAAGGAAAAATTGTATGGGGCACAAAATGCCTCAGTTCTGCATATTGCAACCAACTTCCCATTAATCTGAGGTTCAACTTCATCACCAATAGCATGGTCAAGGACATAACTTCAAGAGACAGCAAGCAGTTTCATATTAATCTTTTGGGGTGCAAGAATTTAACTTTCTACAACATTGTAATCAGTGCACCACAAGAGAGCCTTAACACAGATGGAATTCACATTGGACGTTCCTCGGGGATCAATATCACCGATTCAACCATAGAAACCGGAGATGATTGTGTCTCAATTGGTGACGGCAGTGAGCAAATTAATATCCAAAGAGTAACCTGCGGACCTGGCCATGGCATCAGCGTGGGAAGTCTAGGAAAGTACCCCAACGAAGAACCTGTGGTTGGCATTAGTGTCAAGAACTGCACCCTCACCAACACCCAGAATGGCGTGAGAGTGAAGACATGGCCTGCTTCCCATCAAGGCACTGCCTCTGAAATGCATTTTGAAGATATTGTCATGAATAATGTTGGCAATCCCATAATCATAGATCAAGAGTACTGCCCCCATAACCAATGCAACTTGAAGAGTCCATCACGCATTAAGATCAGCAATGTTAGCTTCAGAAATATCCGGGGCACCACCTCAACTCAGGTTGCTGTCAAGCTTATTTGCAGCCAGGGAGTACCATGCCATGACGTCGAACTTGGTGACATCAACTTGGAATACAATGGAAACGAAGGCCCTGCCATGTCACAGTGTAAAAACATTAAGCCAAATCTACTAGGCGTGCAACTGCCAAGGATTTCTATGGGCATCAGCAGAATTCTGGGTTGTCTTCTTGGGTGTCATATTCTTTTTATTCCTTTTTCCCTCCCTGTCAATGCCCTAACAGCCTATGACTCTGCTGCCAATCTTTCATCTTCATGGATTAATAATGGGTCTCGAGATATTGGTGTTGATTCTGAAGATTACTCCACGCTAAGGCCAATCTTTCTTGGACAAGGCATCAATGCGAGTTTCGCATGTGGCTTCTACTGCAATTATAATTGTGAAGGTTACCTTTTCGCTATCCTCATATTCCCACCAGCCAGAATACACAATTTTCTAGAAGTCCAAGACCCAAAAGTAGTGTGGTCTGCTAATCAGAACTTTCTGGTTAGAGATGATGCAACCTTGCAACTCACGCAAGATGGAGATTTGATCTTGAGAGATGCCGATGGTACTTTTGTTTGGTCCTCTAACACATCTGGTAAGTCTGTTGTGGGCTTAAACTTGACCGAGATAGGAAACCTGGTGCTGTTTGACAGCAATAACGCATCTGTCTGGCAGTCTTTTGATCATCCAACCGACAGTCTAGTTCCAGGACAGATTCTGGTTTTCGATCAGAAACTCACAGCTAGTGCATCCAACAAAGACTGGTCTCAAGGTTTGATTTCATTTTTCATCACTAACTATAGTGTGGTTGCTCTTATTGGGTCCCATAACTATTTTTTTCACTCTCATGGTTATCACAATGGTACAGAATCAAGATATGTCATATTCAGGAAAGAAGGTCTCCTCTTTCCCTCCGCTCAGCCCGTTTTTTCTTTTCCTGGCCCATTTTCTGCTCAGTACATGAAGTTGGAACCCAAAGGTTATTTGACATTTTATGGGTTTTTCAATGACATTTGGAAGGTTTTGTTCAATCCCCTTCTTGGAGACTTCAACTGCGCATACCCTATGATATGTGGCAAATATGGAGTTTGCTCAGAACAGCAGTGCTTTTGTCCAGGACCAACTGCAGGAGAAACAAGATATTTCACGCCAGTAAATGATGAGGAACCTGATCTTGGGTGTAAAGAAATCACACCCCTATCCTGCAATGCTTCTCATTATCAGAGTCTTCTTATGCTCAGAAGCACAGTGTCCGCGCTTATTCTCCCAAACAAGTTTGAGATTTTTAATAAAAAAGAAAGCGACATTGAAAGTTGCAAGCAGGCCTGTTTAAGTAATTGCTCCTGCAAAGCTGCAGTCTTTTGGTCTAGTCACGGAGCTTGCTATCTACTATCTGAAATATTTTCGCTGATGAAGGATGCTCATCCACCGGGGTTGACGACATTCATTAAGGTGCAGAATATCTCAAATCCGGGGGATCCTCCATCTTCCTCAAATCCAGAGGGTCCTCAATCTTCCTCAAGTCCAGAGACTATCATTAGTCAGCTGTTGTCTCCTTTCGGAGCTTTCGTGGGCCTGGTTTTTATAGTTATTATGATAGGAAGATATCTAATTTTGAAAGGAAAAGATGTCAAGGAAGACGGGGAGGATAAAGATCTGCTCCAAGTACCAGGGATGCCAACTAGATTCTCTCACGAAATCTTGATAGTGGCCACTGAAAATTTTAGTCGGGAGCTTGGGAAAGGAGGATTTGGTTCAGTCTTTGAAGGGATTCTGACAGATGGAACAAAAGTTGCTGTGAAGTGTATCAATGGTTTATCTCAGACAAAGGATTATTTCTTAGCTGAGGTTGAGACCATAGGCGGCATTCACCATTTGAACTTGGTGAGACTGGTAGGATACTGTGCCAACAAATCAAATAGATGCTTGGTTTATGAATACATGTTTAATGGCTCCTTGGATAAATGGATCTTCCACAGAAACAAAGAGCTTGCTCTTGATTGGCAAACAAGGAGGAAGATCATCCTGGATATAGCAAAGGGTCTATCCTATCTCCACGAAGAATGCAGACAGAAAATCATCCACTTAGATATCAAACCCCAGAACATCCTTTTAGACGAAAGTTTCAATGCAAAAGTTTCTGATTTCGGACTCTCCAAGCTAATGGACAGGGACCAAAGCCAAGTGGTGACAACCTTGAGAGGAACTCCAGGATACATGGCTCCTGAATGGCTGATCTCCGCAATCACAGAAAAAGTGGACGTCTACAGCTTTGGTATTGTGACTCTGGAAATTTTGTGTGGGCGAAGAAATTTGGATCACTCTCAGCCCGAGGAAGATAAATATTTGTTAAGTCTTTTTAAGAGAAAGGCTGAGGAAGATCAGATGTTGGATTTGGTGGATAAGTACAGTGAGGATATGCAGTTACATGGAGAAGAAGCTGTGGAGCTGATGAGGCTTGCTGCATGGTGTCTACAAAATGACAATGGTAGAAGGCCTTCTATGTCGATGGTGATCAAGGTCTTGGAGGGGGTGATCGATGTTGAAGATAATCTGGACTACAATTTCTTTAATTCATCAGGACTAGGAGCGACTGAAGCAGTTCATCGGAGGGAGATTAATGTGGGTTTTGCCTCTCCTGTGTTGCCGTCTATTCTATCAGGACCCAGGTGA 3702 0.4349 MGLKLNIATTSLLLLLASAAEVSGDIIFDVTKYGARTDGNSDISQALLKAWGDACSSPVASTVMIPDGTYALGQIIIAGPCKAPINFVVQGTVMAPVDTSRFRAEAGWITFQQIDQFTLSGDGVFDGQGKIVWGTKCLSSAYCNQLPINLRFNFITNSMVKDITSRDSKQFHINLLGCKNLTFYNIVISAPQESLNTDGIHIGRSSGINITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGKYPNEEPVVGISVKNCTLTNTQNGVRVKTWPASHQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKISNVSFRNIRGTTSTQVAVKLICSQGVPCHDVELGDINLEYNGNEGPAMSQCKNIKPNLLGVQLPRISMGISRILGCLLGCHILFIPFSLPVNALTAYDSAANLSSSWINNGSRDIGVDSEDYSTLRPIFLGQGINASFACGFYCNYNCEGYLFAILIFPPARIHNFLEVQDPKVVWSANQNFLVRDDATLQLTQDGDLILRDADGTFVWSSNTSGKSVVGLNLTEIGNLVLFDSNNASVWQSFDHPTDSLVPGQILVFDQKLTASASNKDWSQGLISFFITNYSVVALIGSHNYFFHSHGYHNGTESRYVIFRKEGLLFPSAQPVFSFPGPFSAQYMKLEPKGYLTFYGFFNDIWKVLFNPLLGDFNCAYPMICGKYGVCSEQQCFCPGPTAGETRYFTPVNDEEPDLGCKEITPLSCNASHYQSLLMLRSTVSALILPNKFEIFNKKESDIESCKQACLSNCSCKAAVFWSSHGACYLLSEIFSLMKDAHPPGLTTFIKVQNISNPGDPPSSSNPEGPQSSSSPETIISQLLSPFGAFVGLVFIVIMIGRYLILKGKDVKEDGEDKDLLQVPGMPTRFSHEILIVATENFSRELGKGGFGSVFEGILTDGTKVAVKCINGLSQTKDYFLAEVETIGGIHHLNLVRLVGYCANKSNRCLVYEYMFNGSLDKWIFHRNKELALDWQTRRKIILDIAKGLSYLHEECRQKIIHLDIKPQNILLDESFNAKVSDFGLSKLMDRDQSQVVTTLRGTPGYMAPEWLISAITEKVDVYSFGIVTLEILCGRRNLDHSQPEEDKYLLSLFKRKAEEDQMLDLVDKYSEDMQLHGEEAVELMRLAAWCLQNDNGRRPSMSMVIKVLEGVIDVEDNLDYNFFNSSGLGATEAVHRREINVGFASPVLPSILSGPR* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0118 1233 Pfam Glycosyl hydrolases family 28 55 382 IPR000743 GO:0004650|GO:0005975
Vvi12g0118 1233 ProSiteProfiles Bulb-type lectin domain profile. 446 571 IPR001480 -
Vvi12g0118 1233 ProSiteProfiles PAN/Apple domain profile. 745 830 IPR003609 -
Vvi12g0118 1233 ProSiteProfiles Protein kinase domain profile. 916 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0118 1233 SUPERFAMILY Pectin lyase-like 13 395 IPR011050 -
Vvi12g0118 1233 CDD PAN_AP_plant 741 828 - -
Vvi12g0118 1233 MobiDBLite consensus disorder prediction 833 852 - -
Vvi12g0118 1233 FunFam serine/threonine-protein kinase PBS1-like 885 990 - -
Vvi12g0118 1233 CDD B_lectin 499 573 IPR001480 -
Vvi12g0118 1233 Gene3D - 471 571 IPR036426 -
Vvi12g0118 1233 Gene3D Phosphorylase Kinase; domain 1 888 990 - -
Vvi12g0118 1233 Pfam D-mannose binding lectin 501 591 IPR001480 -
Vvi12g0118 1233 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Vvi12g0118 1233 FunFam Uncharacterized protein 44 201 - -
Vvi12g0118 1233 Pfam PAN-like domain 760 795 IPR003609 -
Vvi12g0118 1233 SMART pbh1 205 226 IPR006626 -
Vvi12g0118 1233 SMART pbh1 258 279 IPR006626 -
Vvi12g0118 1233 SMART pbh1 178 204 IPR006626 -
Vvi12g0118 1233 CDD STKc_IRAK 922 1187 - -
Vvi12g0118 1233 FunFam S-receptor-like kinase 5 991 1194 - -
Vvi12g0118 1233 Gene3D Transferase(Phosphotransferase) domain 1 991 1201 - -
Vvi12g0118 1233 FunFam Os04g0303100 protein 491 621 - -
Vvi12g0118 1233 SUPERFAMILY alpha-D-mannose-specific plant lectins 499 575 IPR036426 -
Vvi12g0118 1233 SMART blect_4 446 573 IPR001480 -
Vvi12g0118 1233 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 465 571 - -
Vvi12g0118 1233 SUPERFAMILY Protein kinase-like (PK-like) 898 1186 IPR011009 -
Vvi12g0118 1233 Gene3D - 15 393 IPR012334 -
Vvi12g0118 1233 Pfam Protein kinase domain 919 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0118 1233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1036 1048 IPR008271 GO:0004672|GO:0006468
Vvi12g0118 1233 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 461 1194 - -
Vvi12g0118 1233 FunFam Uncharacterized protein 209 380 - -
Vvi12g0118 1233 SMART serkin_6 916 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0118 1233 ProSitePatterns Protein kinases ATP-binding region signature. 922 944 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0118 Vvi-Chr12 1905862 1915877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0118 41 392 Glycoside Hydrolase AT5G48140 54.520 3.18e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0118 Glyco_hydro_28 7.4e-101 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0118 - - vvi:100254081 1566.21