Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0117 ATGTCTGGCCAAAGCCAGCGATTGACTGTCGTTCCAACTGTTACAATGCTTGGAGTCATGAAAGCACGCCTTGTTGGTGCTACAAGGGGTCATGCTCTCCTCAAGAAAAAGAGTGATGCTCTGACAGTGCAATTTCGTCAAATCCTCAAGAAGATTGTATCCACAAAGGAATCAATGGGAGAGGTCATGAAAGCCTCCTCCTTTGCTCTAACTGAAGCCAAATATGTTGCTGGTGAGAACATCAAGCATGTTGTTCTTGAGAATGTCCAAAATGCATCTCTTAAAGTTCGATCCCGGCAAGAGAATGTGGCTGGTGTGAAGCTTCCCAAGTTTGAGTATTTTAATGAAGGGGAGACTAAGAATGACCTCACTGGATTGGCTAGAGGTGGCCAACAGGTCCAGCTCTGCCGAGCTGCTTATGTCAAAGCAATTGAGGTTCTTGTTGAGCTTGCTTCCCTCCAGACATCATTCTTGACTCTTGATGATGCAATCAAGACCACGAATCGTAGGGTTAATGCCCTAGAGAATGTTGTGAAGCCAAGGTTGGAGAATACCATAATCTACATTAAAGGGGAGCTGGATGAGCTGGAAAGGGAGGACTTTTTCAGGTTGAAGAAGATACAAGGATATAAGAAGAGGGAAATGGAGAGACAGATGGCTTCAGCGAAGGAGTTTTCAGAGGATCAGTTTGCAGGGAAAGTTTCTTTGCAGAAAGGAATTTCATTAAATGCAGCACACAACTTATTGTCTGCAGCTATGGAGAAGGATGAAGATATAATTTTCTGA 786 0.4389 MSGQSQRLTVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGEVMKASSFALTEAKYVAGENIKHVVLENVQNASLKVRSRQENVAGVKLPKFEYFNEGETKNDLTGLARGGQQVQLCRAAYVKAIEVLVELASLQTSFLTLDDAIKTTNRRVNALENVVKPRLENTIIYIKGELDELEREDFFRLKKIQGYKKREMERQMASAKEFSEDQFAGKVSLQKGISLNAAHNLLSAAMEKDEDIIF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0117 261 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 1 261 IPR002699 GO:0046961
Vvi12g0117 261 Coils Coil 179 199 - -
Vvi12g0117 261 FunFam V-type proton ATPase subunit D 1 198 - -
Vvi12g0117 261 Pfam ATP synthase subunit D 17 208 IPR002699 GO:0046961
Vvi12g0117 261 Gene3D - 1 198 - -
Vvi12g0117 261 NCBIfam V-type ATP synthase subunit D 10 212 IPR002699 GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0117 Vvi-Chr12 1902576 1903361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0117 1 261 Primary Pumps ATPases(2) AT3G58730 80.843 6.41e-158 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0117 K02149 - vvi:100259129 491.115