Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0113 ATGGTGGACCAACAAGTGGAATTCCTAGCTGATTTTGCTGAGAAATTTAAAGAATTTTCCCCTGATCATGACAGTTTTGATGATTTTCTTCAAGACCAGGAAATTGTTTATCAATCATTACAAGCTAGCGGCCAGAATAACAGAAATAGTAATGATGATCATTGTGACCAGGAGTCCAGATATTTAGAAGACGGACAATCTTCAAATGCTGAAAGTGTTGAATTACAGCTAGCTGTTGATGAAGCTATTGCTAGATCCTTGATGGAGGAAGACTTTGTGGATGTATCCATCTCTGAACCCAGTGGAACTGCTGAAGGGGACACAGAAGTTACTGAGAATGCGGAAGTTCGTTCTGTTGAAACTTCTGTTGCAGCTGTGAATCAAGATAACATTAATCCAGATGATATGACTTATGAGGAATTGCAAACATTGGGAGAATCCATTGGTGTTGAGAGCAAAGGTCTGTCAGTGAAGCAGATTGCGAGTTTGCAACATACCAAGTTCAAAGAAAAGAAGGGGTTCTTTACAACTAAAAGAATCCATAAGGAGTGTGTTATATGCTGTGTGCAATTCAAGCACAACGAGGAGTTGATTACTTTGTCCTGCAAACATGACTATCACAAGGACTGCATTGCGAAGTGGCTGGAGATCAAAAAGAACTGCCCTGTCTGCCAGAGGGAGGTGGAGCTGCCCGATTTCTGA 702 0.4117 MVDQQVEFLADFAEKFKEFSPDHDSFDDFLQDQEIVYQSLQASGQNNRNSNDDHCDQESRYLEDGQSSNAESVELQLAVDEAIARSLMEEDFVDVSISEPSGTAEGDTEVTENAEVRSVETSVAAVNQDNINPDDMTYEELQTLGESIGVESKGLSVKQIASLQHTKFKEKKGFFTTKRIHKECVICCVQFKHNEELITLSCKHDYHKDCIAKWLEIKKNCPVCQREVELPDF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0113 233 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Vvi12g0113 233 SMART ring_2 184 224 IPR001841 -
Vvi12g0113 233 SUPERFAMILY RING/U-box 183 230 - -
Vvi12g0113 233 FunFam E3 ubiquitin ligase BIG BROTHER 145 229 - -
Vvi12g0113 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 230 IPR013083 -
Vvi12g0113 233 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 228 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vvi12g0113 233 Pfam Ring finger domain 182 225 IPR001841 -
Vvi12g0113 233 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0113 Vvi-Chr12 1845004 1851255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0113 128 228 C3H Transcription Factor Family AT3G63530 51.485 6.12e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0113 K19045 - vvi:100248907 462.996