Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0111 ATGGAAGTTTCAGGTGTTGAACTGCAACCTGAGGTGGACGCCACCTCGGATGCTCCCGAACACTGTCAGGAAAGCAATCAAAAGGAAAAAGGAGAAGGAACCTCCTTAGTTCAGCAGTCTAGACGGCCAAACCTATCGTCTTTGCAGATACCTGTAAGGTCTCTTGAAAATACATCCTCTGCTTTTGCAAGGATAGAAATTTCCTCAGCCCCGAGTCCTACTTCCACTAAAGCAGGATTGCCGCCTAGACCACCTTCAGCTAAATTCAAATCATCCATGAGAAATCTGCTTCCCCAAAGAAGCTTGAGGGCAAAAAATTTGTCTGAGGATGGGGAAAAGACAGTTCTTATCATCCCAGACACACCATCATCGGATGGTCCTTTGGATAAGCCTACTACTTCAAGGTCATTTTCTCTCAACAAGGTTCTTTTCCCTTCAGTAAAAGCAACATATTCTTTACCAGCTACACCAATTGCAAGTTCAGGTTCTGAGTCCCTGCAGGAAAAGAATCTGGATGGTGAATCTGATTTTTCTAAGGTAGAAGTTCAGCATCATATGACACGCTCATTGTCAGTTCCTGTAAATGTTAAAGCCAGAAGTTTAAGGCGGATGGACTCTACAGGAGGTTTGATCCGTGTGATATCAGCAACCCCTCGTCCAGTGGCAGTTGATGGTGCCTCACAAGATGATGCCCCAGTAACAGAAATTGTGAGTGGAGATGATGGGGAAGATATTCCCGAGGAAGAAGCAGTTTGCAGGATTTGTTTCATTGAGCTTGGGGAAGGAGGTGATACTCTTAAGTTGGAGTGTAGCTGTAAAGGTGAACTTGCACTTGCTCACCAAGACTGTGCTGTAAAGTGGTTTAGCATTAAAGGAAACAAGACATGCGATGTCTGCAAGCAGGATGTCCAGAACCTTCCAGTAACATTACTGAAAATACAAAATCCTCAGACTGTTGTTAGACGGCCAGCAACTCTACCACAGCAGAGAGAAGAGACTCGATACAGGGTCTGGCAGGATGTTCCAGTTCTAGTCATGGTCAGCATGCTTGCATATTTCTGCTTCTTAGAGCAATTACTGGTAACTAACCTGGGTCCTCGTGCTCTTGCCATTTCTTTGCCCTTCTCATGTGTTTTAGGTCTTCTTTCGTCCATGATAGCTTCCACCATGGTGAGCAAGAGTTACATATGGGCTTATGCTTCATTCCAGTTTGCAATTGTGATCCTATTTGCTCATATCTTCTATACTATTCTCAACGTAAACCCAATTCTTTCAGTTCTCCTTTCCTCATTCACTGGGTTTGGAATTGCAATAAGCACAAATTCGCTTCTAGTAGAGTACCTGAGATGGAGAGCAAGCAGGCAGGTGCGATCTTCCGATCAAAATAACAGAGGTGTGCAACAACCACAACGGCACCATCACCACCACCACCACCACCACCAGTGGCAGCAGCAGCAGCAACAACAACAACAACAACATCAACACCAATTACAAGACCTAATACAAGAATCCAATACTGGGCCTACAGAGAGTTCCAGGCAAGAAGAAAACAGGATTCAGAACACTTGA 1569 0.4468 MEVSGVELQPEVDATSDAPEHCQESNQKEKGEGTSLVQQSRRPNLSSLQIPVRSLENTSSAFARIEISSAPSPTSTKAGLPPRPPSAKFKSSMRNLLPQRSLRAKNLSEDGEKTVLIIPDTPSSDGPLDKPTTSRSFSLNKVLFPSVKATYSLPATPIASSGSESLQEKNLDGESDFSKVEVQHHMTRSLSVPVNVKARSLRRMDSTGGLIRVISATPRPVAVDGASQDDAPVTEIVSGDDGEDIPEEEAVCRICFIELGEGGDTLKLECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQNPQTVVRRPATLPQQREETRYRVWQDVPVLVMVSMLAYFCFLEQLLVTNLGPRALAISLPFSCVLGLLSSMIASTMVSKSYIWAYASFQFAIVILFAHIFYTILNVNPILSVLLSSFTGFGIAISTNSLLVEYLRWRASRQVRSSDQNNRGVQQPQRHHHHHHHHHQWQQQQQQQQQQHQHQLQDLIQESNTGPTESSRQEENRIQNT* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0111 522 MobiDBLite consensus disorder prediction 458 498 - -
Vvi12g0111 522 Coils Coil 483 503 - -
Vvi12g0111 522 SMART ringv_2 251 300 IPR011016 GO:0008270
Vvi12g0111 522 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Vvi12g0111 522 MobiDBLite consensus disorder prediction 503 522 - -
Vvi12g0111 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 307 IPR013083 -
Vvi12g0111 522 MobiDBLite consensus disorder prediction 468 482 - -
Vvi12g0111 522 MobiDBLite consensus disorder prediction 1 53 - -
Vvi12g0111 522 MobiDBLite consensus disorder prediction 68 95 - -
Vvi12g0111 522 SUPERFAMILY RING/U-box 248 303 - -
Vvi12g0111 522 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Vvi12g0111 522 CDD RING_CH-C4HC3_MARCH 252 300 - -
Vvi12g0111 522 PANTHER OS02G0165000 PROTEIN 16 464 - -
Vvi12g0111 522 MobiDBLite consensus disorder prediction 29 53 - -
Vvi12g0111 522 MobiDBLite consensus disorder prediction 483 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0111 Vvi-Chr12 1795965 1822123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0111 237 306 C3H Transcription Factor Family AT2G37950 43.662 5.64e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0111 - - vvi:100243829 963.755