Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0108 ATGAGGCTCTCTTCATCGGGTTTTGCTCATCAAACAGAAGAAGGGGAAAAGAAATGCTTGAATTCGGAGCTATGGCATGCATGTGCAGGCCCTCTTGTATCTCTGCCTGCTGTTGGAAGTCGTGTGGTGTACTTCCCCCAGGGTCACAGTGAACAGGTTGCTGCCTCAACCAACAAGGAAGTAGATGCTCATATCCCTAACTACCCTAGTTTGGCCCCTCAACTTATTTGTCAGCTTCATAATGTGACCATGCATGCAGATGTTGAGACAGATGAAGTATATGCTCAGATGACCTTGCAACCATTGAGTCCGCAAGAGCAAAAAGAAGTGTGCCTGCTACCAGCAGAATTGGGTTCCCCCAGCAAACAGCCAACCAACTATTTCTGCAAAACATTGACTGCAAGTGACACCAGTACTCATGGAGGATTCTCTGTTCCTCGCCGGGCTGCTGAAAAAGTGTTTCCTCCTCTTGATTACACCCAGCAGCCTCCTGCTCAAGAATTGATTGCAAGGGATCTTCATGGTAATGAATGGAAATTCAGACATATATTTCGTGGCCAGCCCAAGAGGCATCTTCTTACAACAGGATGGAGTGTGTTTGTAAGTGCAAAAAGACTTATTGCCGGCGATTCTGTCCTTTTTATCTGGAACGAAAAGAATCAATTACTCCTGGGTATTCGGCGAGCTAATCGTCCACAAACCATAATGCCTTCATCAGTTTTATCAAGTGATAGCATGCATATTGGCCTTCTTGCTGCAGCTGCCCATGCAGCTGCCACAAATAGCCGCTTTACTATATTTTACAATCCAAGGGCTAGTCCATCAGAATTCGTCATACCTTTGGCAAAGTATGCCAAAGCAGTCTATCATACCCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTGTTTGAGACGGAAGAGTCGAGTGTCCGTCGGTACATGGGCACAATAACTGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAACTCACATTGGCGCTCTGTAAAGGTTGGTTGGGATGAATCCACTGCCGGGGAGAGGCAACCCAGAGTTTCCTTGTGGGAGATTGAGCCTTTAACAACATTCCCAATGTATCCATCCCCTTTCCCACTTAGACTGAAGCGACCATGGCCCTCTGCCCTACCTTCCTTCCACGCTCACAAAGATGGTGATATGAGCATAAATTCTCCACTCATGTGGCTCCGAGGAGACATTGGAGATCAGGGGATTCAGTCTTTAAATTTTCAGGGTTATGGACTTACACCCTGGATGCAACCAAGGCTTGATGCATCAATGCTTGGTTTACAATCTAACATGCAACAAGCTATAGCAGCTGCTTCGCTTCAGGAATTGAGAGCACTGGATCCTTCCAAACATCCTGCTCAGTCCCTTTTGCAGTTCCAGCAACCACAAAATGTTTCCAATAGTCCTGCTTCTGTCTTCCGGGGGCAGATGTTGCAGCAGACACAATCTCAACATGCTTTTCTTCAAAGCTTTCAAGAAAACCCACCCCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCATGCTCATGCTCATGCTCAGGCTCAGGCTCATGCTCAGGCTCAGGCTCAGGCTCATGCTCAGGCTCATGCTCAGGCTCAGGCTCATGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGGCTCAGGCTCATGCTCAGGCTCAGGCTCAGGCCCAGCTTCTGCAACAACAGTTGCAGGGTCGGCAGGCGTTGAGTAATCAACAGCAGCAACAACAGCTTCAACAGCAGCAGCAGCAACAACACCATCAACAACAGCAGCAGCAACAACAACATCAACAACAGCAGCCACAACTTCAACAACCCCAGCAGCTGCATCGGCAGTTGTCTGATCAGCAACATATCCCAAAGGTCATATCTGCTCTATCTCAGCTTTCATCACCCACTCAATCTCTGCCTCCTTCCTTACAGACTATCCCTTCACCAATACAGCAGCAGATTTTTCCTGATTCTGTTGGGAACCCAATTACTACATCAGATGTTTCTACCATGCAGAGTCTTTTAGGTTCATTCTCCCAAGATGGAACATCCCATCTACTTAACTTGCATGGATCAAATCCTGTAATTTCTTCTTCTGCCTTCTTTCCCAAGCAAGTTGCGGTTGAACCTCCGCTTCCCTCTGGAACTACTCAATGTGTACTGCCCCAGGTGGAAGAGTTGGCAACACCGCCTTCAAATGCCTCTGAACTCTCCACCTTGTTGCCACCTTTTCCTGGTAGAGAGTACTCTGTGTACCAAGGTGTTGCTGATCCCCAAAACAATCTTCTGTTTGGGGTTAATATAGACTCTTCATCTCTTATGCTGCAAAATGGGATGTCAAATCTAAGAAGTATTGGCAGTGAGAATGATTCAGTGTCTATGCCATTTTCTACGCCTAATTTTGCAAATGCTCCAGGCACCGATTTTCCACTTAATTCAGACATGACAACTTCAAGTTGCATAGATGAATCAGGTTTCTTGCAGTCTTCTGAAAATTTGGAGCAAGTAAACCCACCAACCAGAACCTTTGTTAAGGTTCACAAGTTAGGGTCCTTTGGGAGGTCACTGGATATCACCAAATTCAGCAGCTATGATGAGCTGCGTGGTGAGCTTGGCCGAATGTTTGGCCTTGAAGGCCGGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTCAATAATGTGTGGTATATCAAGATACTATCTCCGCTTGAAGTCCAGCAGATGGGCAAAGAAGGCATCAATGTCCCGAATCCCATCCCAAGCCACAGGATTTCCAATAGTGGCAACAGCTGTGATGACTACTGA 2898 0.4745 MRLSSSGFAHQTEEGEKKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLAPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEVCLLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSALPSFHAHKDGDMSINSPLMWLRGDIGDQGIQSLNFQGYGLTPWMQPRLDASMLGLQSNMQQAIAAASLQELRALDPSKHPAQSLLQFQQPQNVSNSPASVFRGQMLQQTQSQHAFLQSFQENPPQAQAQAQAQAHAHAHAQAQAHAQAQAQAHAQAHAQAQAHAQAQAQAQAQAQAQAQAHAQAQAQAQLLQQQLQGRQALSNQQQQQQLQQQQQQQHHQQQQQQQQHQQQQPQLQQPQQLHRQLSDQQHIPKVISALSQLSSPTQSLPPSLQTIPSPIQQQIFPDSVGNPITTSDVSTMQSLLGSFSQDGTSHLLNLHGSNPVISSSAFFPKQVAVEPPLPSGTTQCVLPQVEELATPPSNASELSTLLPPFPGREYSVYQGVADPQNNLLFGVNIDSSSLMLQNGMSNLRSIGSENDSVSMPFSTPNFANAPGTDFPLNSDMTTSSCIDESGFLQSSENLEQVNPPTRTFVKVHKLGSFGRSLDITKFSSYDELRGELGRMFGLEGRLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGINVPNPIPSHRISNSGNSCDDY* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0108 965 FunFam Auxin response factor 846 940 - -
Vvi12g0108 965 Gene3D - 126 229 IPR015300 -
Vvi12g0108 965 MobiDBLite consensus disorder prediction 502 517 - -
Vvi12g0108 965 SMART B3_2 128 230 IPR003340 GO:0003677
Vvi12g0108 965 MobiDBLite consensus disorder prediction 502 544 - -
Vvi12g0108 965 Gene3D - 292 364 - -
Vvi12g0108 965 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vvi12g0108 965 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Vvi12g0108 965 ProSiteProfiles PB1 domain profile. 851 935 IPR000270 GO:0005515
Vvi12g0108 965 Gene3D - 848 940 - -
Vvi12g0108 965 FunFam Auxin response factor 292 364 - -
Vvi12g0108 965 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi12g0108 965 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vvi12g0108 965 SUPERFAMILY CAD & PB1 domains 842 925 - -
Vvi12g0108 965 MobiDBLite consensus disorder prediction 950 965 - -
Vvi12g0108 965 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vvi12g0108 965 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 941 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g0108 965 Pfam AUX/IAA family 846 933 IPR033389 -
Vvi12g0108 965 MobiDBLite consensus disorder prediction 525 544 - -
Vvi12g0108 965 Coils Coil 555 575 - -
Vvi12g0108 965 FunFam Auxin response factor 126 230 - -
Vvi12g0108 965 Coils Coil 584 612 - -
Vvi12g0108 965 MobiDBLite consensus disorder prediction 600 628 - -
Vvi12g0108 965 MobiDBLite consensus disorder prediction 945 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0108 Vvi-Chr12 1746885 1765195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0108 639 965 B3 DNA Binding Superfamily AT1G30330 55.977 3.70e-94 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi12g0108 AUX_IAA 2.1e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0108 - - vvi:100260866 1024.23