Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0102 ATGAATCACCCCCTTCTTCCAGATTGGAATATTGAAGGCGATGTCCCTGTAACCAATCAGAAGAAACCCATGGGGCAAGAGCATGAGCTTGTAGAGCTCTTATGGCGAAATGGGCAGGTGGTATTGCACAGCCAAACACAGAGAAAATCCGGTCTTGCTCCAAATGAGTCTAAACAAGTTCAGAAACATGATCAAACCATGCTAAGGAATGGTGGGTCATGTGGGAATTGGAGTAATTTGATTCAGGATGAGGAGTCAATCTCATGGATCCAATACCCACTGGACGATTCCCTTGACAAGGAGTTCTGTTCTAATTTGTTCATGGAATTGCCGCCCAATGATCCAGTTCAGCCTGAAAAGCCTGTTAGACACTCTGAACAAGAAAAGTCTGTCCCCAGCTCACAACAACCTATTTTTAAGCATTTGGGTAGTCCTGAATTCCCAGGAAACCCAATGCCGCCGCCTAAGTTTCAGGTTCCTGGTTCAGTCCAGCAGAATTGCAGCTCAGGAGGATTTGGAAAGATTGTTAACTTTCCTAACTTTTCATTCCCAGGGAGAAGCAATTTAGGATCTTCCAAGGCACAACTGGGGGGAAAGGGATCAGGAAATATGGCACAAGGAGGAGATGCTAAAGAGGGTTCAGTCATGACAGTTGGGCTGAGCCACTGCGGCAGCAATCAAGTTGTGAATGAGGCTGACTTGAGCCGATTTTCAAGCAGTGGCGTTGGCACCGGTTGTTTATCTTCAGGGCATGTCAAGGAAAATGTTATGAGGATAGTTTCTCAGGGGGACAGAAGGCAAACAGAGACGCTTGAACCTACTGTTACTTCATCTTCCGGTGGTGGGTCGGGCAGTAGTTTTGGGAGAACATACAAGCAGTCGACCGACACCAATAGCCACAAAAGAAAGGGCAGAGAAGCAGAGGAATCTGAGTGCCAAAGCGAGGCTGCTGAACATGAATCAGCTGCAAGAAACAAGGCATCACAAAGATCCGGGTCAACTAGGAGGAGCCGTGCTGCTGAAGTCCATAATCTCTCAGAGAGGAGACGGAGAGATCGAATCAATGAGAAAATGAAGGCATTACAGGAGCTTATACCTCACAGCAACAAGTCAGATAAAGCATCGATGCTAGATGAGGCAATTGAGTACTTGAAGTCCCTTCAGTTACAACTTCAGTTGATGTGGATGGGAGGTGGTGTCGCGCCTATGATGTTTCCAGGAGTCCAGCACTATATGGCCAGAATGGGAATGGGAATGTGTCCACCTCCACTGCCTTCTATTCACAACCCAATGCATTTACCAAGGGTTCAACTAGTTGATCAGTCCACATCTGCAGTTCCACCATCAAACCAGCCTCCAATTTGCCAAACCCCAGTCTTGAATCCGGTTAATTATCAAAATCAGATGCCAAATCCCAACTTTCCGGAGCAGTTTGCGCATTACATGGGCTTCCACCCTATGCAAACTCCCTCTCAGCCCATGAATGTGTTCAGCTTTGGATCCCAGAGTCACCCCATGGCATCGCCTGCCACCACTGGTGGCACCCCCACTGCAGCTGCTGCAGTTGATGGTGCTCCAGGCAGCAAGTTGGGTTAA 1596 0.4787 MNHPLLPDWNIEGDVPVTNQKKPMGQEHELVELLWRNGQVVLHSQTQRKSGLAPNESKQVQKHDQTMLRNGGSCGNWSNLIQDEESISWIQYPLDDSLDKEFCSNLFMELPPNDPVQPEKPVRHSEQEKSVPSSQQPIFKHLGSPEFPGNPMPPPKFQVPGSVQQNCSSGGFGKIVNFPNFSFPGRSNLGSSKAQLGGKGSGNMAQGGDAKEGSVMTVGLSHCGSNQVVNEADLSRFSSSGVGTGCLSSGHVKENVMRIVSQGDRRQTETLEPTVTSSSGGGSGSSFGRTYKQSTDTNSHKRKGREAEESECQSEAAEHESAARNKASQRSGSTRRSRAAEVHNLSERRRRDRINEKMKALQELIPHSNKSDKASMLDEAIEYLKSLQLQLQLMWMGGGVAPMMFPGVQHYMARMGMGMCPPPLPSIHNPMHLPRVQLVDQSTSAVPPSNQPPICQTPVLNPVNYQNQMPNPNFPEQFAHYMGFHPMQTPSQPMNVFSFGSQSHPMASPATTGGTPTAAAAVDGAPGSKLG* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0102 531 MobiDBLite consensus disorder prediction 336 353 - -
Vvi12g0102 531 MobiDBLite consensus disorder prediction 261 294 - -
Vvi12g0102 531 MobiDBLite consensus disorder prediction 113 136 - -
Vvi12g0102 531 CDD bHLH_AtPIF_like 338 399 IPR047265 -
Vvi12g0102 531 MobiDBLite consensus disorder prediction 501 531 - -
Vvi12g0102 531 MobiDBLite consensus disorder prediction 295 325 - -
Vvi12g0102 531 PANTHER TRANSCRIPTION FACTOR PIF3 18 517 IPR044273 GO:0003700|GO:0006355
Vvi12g0102 531 Pfam Helix-loop-helix DNA-binding domain 342 388 IPR011598 GO:0046983
Vvi12g0102 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Vvi12g0102 531 FunFam Basic helix-loop-helix transcription factor 333 396 - -
Vvi12g0102 531 SMART finulus 344 393 IPR011598 GO:0046983
Vvi12g0102 531 MobiDBLite consensus disorder prediction 260 353 - -
Vvi12g0102 531 Gene3D - 333 394 IPR036638 GO:0046983
Vvi12g0102 531 MobiDBLite consensus disorder prediction 501 515 - -
Vvi12g0102 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 398 IPR036638 GO:0046983
Vvi12g0102 531 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0102 Vvi-Chr12 1647402 1650131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0102 5 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 35.283 7.08e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi12g0102 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0102 K16189 - vvi:100262490 1041.95