Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0090 ATGAGCTACTCTATTTTTCATCAGCCGGAAATGAAGAATTCTCAGAGAACTGGAGTAAGGCAGTACAACAAATCGGAGTTCCCGCGTTTGCGGTGGACGCCTGAGCTCCACGATCACTTTGTTGAAGTTGTTGAACGTCTCGGTGGGAAATACAGAGCGACGCCCAAGAGGATTCTGCAGATGATGAGTGTGAAGGGACTGAAGATATCTCATGTCAAAAGCCATCTTCAGATGTACAGAAACATGAAAGGTTGCAGTAACATCAATATCCTCGTACCCATGAAGCATTTGTGTGAAGAGAGAGCAAATTTTAATGCTAATGGATTCTTCCCCATTAGCTCATCTCAGAGGCTAACAGCAAGGAATGAGTTAAGAGAATGGGAACTTGACAGGAGGGGCTTTGAACCCAACGTCTTTCATGAAGAAAGTGATGGCCTCCAAATAATGGAAGAAACTGGTGATTACGAGCAACAGGACACGCAAACAAGCTTACTTAGTGGAACGTCGAAGGAAGAAGATGTTGGACCAAAAGAAATTTGTGAACTCTCCTTATCATTCGCGACCTCGCCATTGATGCGAAGCAAAAAAGACCAAGAGTCATGGCCTCTCAACAATATTGATCACACTCGCCATTCGAATGCAACAGCAAGGAAATTCATAAACATTCCCCATTTTCAATCGCTCAGAGAAAATCGCTTAAACCTAGACTTAACCATCTCTACGTGTTTCTCCCACTCAAATTAG 744 0.4341 MSYSIFHQPEMKNSQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKISHVKSHLQMYRNMKGCSNINILVPMKHLCEERANFNANGFFPISSSQRLTARNELREWELDRRGFEPNVFHEESDGLQIMEETGDYEQQDTQTSLLSGTSKEEDVGPKEICELSLSFATSPLMRSKKDQESWPLNNIDHTRHSNATARKFINIPHFQSLRENRLNLDLTISTCFSHSN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0090 247 MobiDBLite consensus disorder prediction 1 20 - -
Vvi12g0090 247 FunFam Myb family transcription factor 26 84 - -
Vvi12g0090 247 Gene3D - 28 83 - -
Vvi12g0090 247 NCBIfam myb-like DNA-binding domain, SHAQKYF class 28 82 IPR006447 GO:0003677
Vvi12g0090 247 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 157 IPR046955 GO:0003700
Vvi12g0090 247 Pfam Myb-like DNA-binding domain 30 80 IPR001005 -
Vvi12g0090 247 SUPERFAMILY Homeodomain-like 28 81 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0090 Vvi-Chr12 1480087 1485512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0090 18 83 G2-like Transcription Factor Family AT1G14600 66.667 2.52e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi12g0090 Myb_DNA-binding 9.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0090 - - vvi:100855381 508.449