Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0082 ATGGAGGTGGAGAAGACTAGCACTTTAGACAACAAGAAGGATGATGATGAAGAAGTCGTGCTCCCCGGATTCCGGTTTCATCCTACTGATGAAGAACTTGTAGGGTTTTATCTGCGGCGGAAGGTGGAGAAGAAACCAATCAGTCTTGAACTCATCAAACAGGTGGATATCTACAAATATGATCCATGGGATCTTCCAAGAGTCAGCACTAACATGGGAGATAGAGAGTGGTACTTCTTCTGCATAAGAGGGAGAAAGTATAGGAACAGCATAAGGCCTAATCGAGTCACAGGGTCCGGATTTTGGAAAGCCACAGGCATTGACAAGCCTATATATTCTGTTGAAGCAACCAATGAGTGCATTGGCCTGAAGAAATCCTTGGTCTACTACCGTGGAAGCGCTGGAAAAGGCACCAAAACCGATTGGATGATGCATGAGTTCCGCCTCCCACCAGGTGGGAAAGGCACCTACTTCCCCAATGCAAAGAATGTCACTCAAGAAGCTGAAGTCTGGACACTCTGTCGAATTTTCAAACGAAGCCCAACTTATAGGAAATACACACCTGAAGGGAAAGGATCAATATCAAACAAACAGGTTGCCACTGATTCAAGCTCCAAGACCTGTAGTTTAGAATCCGACAACAATGACAAGTACTTGAGCTTTGAAAACTCCACCACTCGGACCAAGAACAGCACTGTTGTCGACAGCAGTATCGATGAAAGAAGCCAGTTGGTTGTCGGCCAAATGAGCTCATTTGTTTCACCATACAGTGGACCATACTCGAGCTTTTGGAACCCAAATGGAAATGATCAATTCTTCACAAGCGGAAACTGGGATGAGCTGAGATCGATAGTGGAGTCAGCCATCGATCCACCTCATGTTTATGACTGTAGATAG 897 0.4537 MEVEKTSTLDNKKDDDEEVVLPGFRFHPTDEELVGFYLRRKVEKKPISLELIKQVDIYKYDPWDLPRVSTNMGDREWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVEATNECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPGGKGTYFPNAKNVTQEAEVWTLCRIFKRSPTYRKYTPEGKGSISNKQVATDSSSKTCSLESDNNDKYLSFENSTTRTKNSTVVDSSIDERSQLVVGQMSSFVSPYSGPYSSFWNPNGNDQFFTSGNWDELRSIVESAIDPPHVYDCR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0082 298 ProSiteProfiles NAC domain profile. 20 179 IPR003441 GO:0003677|GO:0006355
Vvi12g0082 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 225 - -
Vvi12g0082 298 Pfam No apical meristem (NAM) protein 22 149 IPR003441 GO:0003677|GO:0006355
Vvi12g0082 298 SUPERFAMILY NAC domain 19 179 IPR036093 GO:0003677|GO:0006355
Vvi12g0082 298 Gene3D NAC domain 29 183 IPR036093 GO:0003677|GO:0006355
Vvi12g0082 298 FunFam NAC domain-containing protein 35 29 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0082 Vvi-Chr12 1387462 1390303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0082 17 180 NAC Transcription Factor Family AT5G39820 61.236 4.58e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi12g0082 NAM 2.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0082 - - vvi:100259242 624.394