LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0056	ATGATGAGTAAATCATCACAAGGTTCGGACAAATCTCTCTCATTTGATGACGTCTCGAATTGTTTCTCTTTGCCCATCTCCGAAGCCGCCAACGCTCTCGGTGTCTGCACTAGTGTTCTGAAGAAAATATGTCGCGAAAATGGACTTCAGAGGTGGCCCTACCGCAAGTTTCAATCTGGAACAAGTGTTGAAGAAATTAAGAAGTATGCTGCTAGAGAAAGAAACAAGGAACTTGCTCAATTGTCGAAGGTTGATGTGCAAGGAAATGACGCTTTAACAAGTTCAGCTGTATCAGCAGCCTTTGGCTCCCAGCCCCAAAACGATACTAAAAGTTCTCTCTGGAAAATGTCCAAATTACATGGTGCCATACCACCTCATATGTTGCAACAGCAAGGAAGCAGGAACATTCAAAATGGGCGACCCCAGAATCTGCCTAATGCAAGTTTGAGCAAAGGAATTGCAGCCTCTTTGGATGAATTTAAATATGGATTCCCAACGAGTGGTCTAGCAACTGCCTCAAATAAGTGGTGGGGAAGCAGCAGTCCTGATGGCTATGAAGGTACCATTGGTAATGGAGTTGAAATTGATGAAGAAGACAAAAAACAGTCTGAACAATTGGCAGATAATGGTGCCAATTTGTTAGTAATGGATGGAGAGAAAGCTGAAAATGAGAAAGAGGAGGGCACCATTGGTCCCCAAGGGACAGGTTTATTGACGGCTGTGAGGAAAACTACTGTAGAGGAAGGACGGAAAATACTAAAGATTGGTGTTGGTAGGGATCATGGTGTGCTCAAGGCAGGGAAGAAAGAGAGAAGGTTGCTGCTTCAAATATTTGGATCTTCATTGCCAAGTCAATGGATAAATGGCTCTTCATGA	876	0.4349	MMSKSSQGSDKSLSFDDVSNCFSLPISEAANALGVCTSVLKKICRENGLQRWPYRKFQSGTSVEEIKKYAARERNKELAQLSKVDVQGNDALTSSAVSAAFGSQPQNDTKSSLWKMSKLHGAIPPHMLQQQGSRNIQNGRPQNLPNASLSKGIAASLDEFKYGFPTSGLATASNKWWGSSSPDGYEGTIGNGVEIDEEDKKQSEQLADNGANLLVMDGEKAENEKEEGTIGPQGTGLLTAVRKTTVEEGRKILKIGVGRDHGVLKAGKKERRLLLQIFGSSLPSQWINGSS*	292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0056	291	PANTHER	-	119	288	-	-
	Vvi12g0056	291	ProSiteProfiles	RWP-RK domain profile.	1	79	IPR003035	-
	Vvi12g0056	291	Pfam	RWP-RK domain	13	59	IPR003035	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0056	10	135	NLP Transcription Factor Family	AT4G24020	33.588	3.48e-11	61.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Vvi12g0056		RWP-RK	3.8e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0056	-		-	vvi:104880844	571.237