Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0054 ATGGGCAACGTTAGGGTTTTAGCTTTCTATATCACAATATGCTGCATAGCATTCATTGTGTCCAAGGTCATCATTTCATTTCTCCTCTACCAGAGATGGAAGAGAAAGCACAGCATTTTCCAGGACAGCATATCAGTTGGGAAGATGGTGATTTTCAGGTCAGAGTTGATGCGATGTCTGACAGAGGATGTGTTTCTGAAGAAGACGATGAAGCTGACGAATAAGGATATACTGGGTTCAGGAGGGTATGGGACGGTGTACAAGCTCACGGTGAATGAGTCGATTGCATTTGCAGTAAAGAGATTGAATAGGGGGAGTGAGGATAGAGACAAGGGGTTTGAGAGAGAGTTGAAAGCAATGGGAGATATCAAGCATAGGAATATTGTAACTCTTCATGGCTACTTCAGATCGCCTCAGTACAATCTTCTTATATATGAGCTAATGCCAAATGGAAGTTTAGATGCATTACTTCATGGAAAATCAAGCAACAAGATGACTCTGGACTGGCATTCGAGATACAAAATAGCAGTGGGTGCAGCACGGGGCATATCGTATCTTCACCATGACTGTATCCCTCACATAATTCATAGAGATATCAAATCCAGCAATATACTGCTTGATGATAACATGGAAGCTCGAGTTTCAGACTTTGGACTAGCCACATTAATGGAACCAGATAGGACTCATGTTTCCACAATTGTGGCTGGGACCTTTGGGTATTTGGCTCCAGAGTATTATGAAACAGGTAGAGCAACAGCAAAAGGGGATGTTTACAGCTTTGGGGTTGTTTTGCTTGAGCTCCTAACAGGTAAAAGACCGATGGATGAGACGTTCATTGAGGAAGGGACTAAACTGGTGACCTGGGTGAAAGCAGTTGTTGATGAGAAGAGGGAAGAGCAAGCAATTGATTGTAATTTAGATTCATGTCCTGTGGAAGAAGTCAACCAAGTATTCTATGTTGCACTAACATGCCTAGAATCCGAGCCATCAAAGCGACCAACCATGGCTGAGGTTCTCAAGATGCTTGAGGAGATAAAATCAAATAAACATGTTTCCTAA 1059 0.424 MGNVRVLAFYITICCIAFIVSKVIISFLLYQRWKRKHSIFQDSISVGKMVIFRSELMRCLTEDVFLKKTMKLTNKDILGSGGYGTVYKLTVNESIAFAVKRLNRGSEDRDKGFERELKAMGDIKHRNIVTLHGYFRSPQYNLLIYELMPNGSLDALLHGKSSNKMTLDWHSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDDNMEARVSDFGLATLMEPDRTHVSTIVAGTFGYLAPEYYETGRATAKGDVYSFGVVLLELLTGKRPMDETFIEEGTKLVTWVKAVVDEKREEQAIDCNLDSCPVEEVNQVFYVALTCLESEPSKRPTMAEVLKMLEEIKSNKHVS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0054 352 Gene3D Phosphorylase Kinase; domain 1 54 147 - -
Vvi12g0054 352 SUPERFAMILY Protein kinase-like (PK-like) 58 344 IPR011009 -
Vvi12g0054 352 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0054 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi12g0054 352 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0054 352 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 11 347 - -
Vvi12g0054 352 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 352 - -
Vvi12g0054 352 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Vvi12g0054 352 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0054 352 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Vvi12g0054 352 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0054 Vvi-Chr12 945954 948375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0054 28 343 Receptor kinase-like Gene Family AT2G35620 48.113 4.83e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vvi12g0054 Pkinase 5.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0054 - - vvi:100254072 706.057