Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0053 ATGGCCACTTCATCAACAATGGCTCTCTCTTCTCCTTCCCTTGCTGGACAAGCTGTGAAGCTTGCACCCAATGTCACTGAGCTTCTTGCTGGTGATCAAGGAAGAGTCACAATGAGAAAATCTGTGGCAAAATCTAAAGCAGTTTCTTCAGGAAGCCCCTGGTATGGCCCTGACCGAGTCAAGTACTTGGGGCCCTTCTCTGGTGAGCCACCATCCTACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGACACTGCAGGCCTCTCAGCTGATCCGGAGACCTTCGCCAAGAATCGTGAGCTTGAGGTCATCCACTGCAGGTGGGCAATGCTTGGAGCTCTCGGATGCGTCTTCCCGGAGCTTCTGTCGCGCAACGGGGTCAAGTTTGGGGAGGCAGTGTGGTTCAAGGCTGGTGCGCAGATATTCAGCGAGGGTGGACTGGACTACTTGGGAAACCCTAATTTGGTGCATGCACAAAGCATATTGGCTATTTGGGCCACACAGGTGATCCTGATGGGCGCAGTTGAGGGCTACCGCATTGCCGGAGGACCACTTGGGGAGGTCACCGATCCCCTTTACCCCGGTGGAAGCTTTGATCCACTAGGGCTAGCTGATGACCCTGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGGAGGCTGGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCTATTGTCACCGGAAAGGGTCCACTGGAGAACTTGGCTGACCACCTTGCCGACCCCGTTAACAACAATGCTTGGGCATATGCCACAAACTTTGTTCCTGGCAAGTGA 813 0.5363 MATSSTMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0053 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 270 IPR001344 GO:0009765|GO:0016020
Vvi12g0053 270 Pfam Chlorophyll A-B binding protein 70 236 IPR022796 -
Vvi12g0053 270 SUPERFAMILY Chlorophyll a-b binding protein 53 267 - -
Vvi12g0053 270 FunFam Chlorophyll a-b binding protein, chloroplastic 61 263 - -
Vvi12g0053 270 Gene3D Chlorophyll a/b binding protein domain 61 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0053 Vvi-Chr12 931780 932592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0053 4 270 Chloroplast and Mitochondria Gene Families AT1G29930 86.940 1.84e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0053 K08912 - vvi:100250504 542.347