Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0052 ATGTCATCGCAGAAATCTTTGGACACTGAATTGTCGAAGAAATTTCTGGGTCTAAAACTTTGGGTTTTAATTGGTGTATGTGTTGGTGCATTCATAGTTTTGATTCTATGTATCTTATCTATATGGGTCATGTTCAGACGAAAATCTCGAAGAACCCTTGACAAATTCACCCTTTCTCAAATACCCAATGTCTCTAAAGATATCAAGGTTGACAGGATTGGGACTCAGAATTTTCATGATGAAAGTTTATTCCTTAATGTCAATGATAAATCAACTGACAGAAATTCTGAGAAGATGTATCATTTGGGTGTGAGCAAATCAAGTGATCCTGACAATGTCAGCCAGTGCAGCTCCATTTATCATCATGAGAGAGGCTGTAGTTCACAATCAGGGGAAGAAGGAAGTTCTGGAACTGTTCGGAAGCATTCTTCATTGTCATATGGGCTTGCATCAGCCTCTCCTTTAATCGGTTTACCAGAAGTGTCTCATCTTGGTTGGGGCCACTGGTTTACTCTTAGAGATCTTGAGTATGCAACAAGTCGTTTCTCAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTGGGACAGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGGATGCTGGTGTATGAATATGTGAACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCGCTTGCCTATTTGCATGAGGCAATAGAACCGAAAGTTGTTCATCGAGACATAAAATCAAGCAACATCTTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACTGGCTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGGTTAATCTTGTCGAGTGGCTTAAAGTGATGGTAGGGACAAGAAGAGCTGAAGAAGTTGTGGATCCAAACCTTGAAGTTAAGCCCACAACACGTGCTCTAAAACGCGCTCTTCTTGTCGCCCTTAGGTGTGTTGACCCTGACTCAGAAAAGAGACCCAAAATGAGTCAGGTTGTTCGAATGCTCGAACAGGATGAATACCCATTTCGTGAGGACCGAAGGAAGAGCCGAACAACCAGCATGGACCTTGAGTCCATGAAGGAGAACTCTGGTTCAGGCGACGTGGAGAACAAGGTAAATGAATCAGAGTGCCATACTTCAGAGGCGATTCATGGATAG 1512 0.4332 MSSQKSLDTELSKKFLGLKLWVLIGVCVGAFIVLILCILSIWVMFRRKSRRTLDKFTLSQIPNVSKDIKVDRIGTQNFHDESLFLNVNDKSTDRNSEKMYHLGVSKSSDPDNVSQCSSIYHHERGCSSQSGEEGSSGTVRKHSSLSYGLASASPLIGLPEVSHLGWGHWFTLRDLEYATSRFSAENVLGEGGYGVVYKGRLINGAEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQYGNLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVVDPNLEVKPTTRALKRALLVALRCVDPDSEKRPKMSQVVRMLEQDEYPFREDRRKSRTTSMDLESMKENSGSGDVENKVNESECHTSEAIHG* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0052 503 ProSiteProfiles Protein kinase domain profile. 182 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0052 503 Coils Coil 202 222 - -
Vvi12g0052 503 MobiDBLite consensus disorder prediction 460 503 - -
Vvi12g0052 503 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Vvi12g0052 503 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Vvi12g0052 503 FunFam Putative receptor-like serine/threonine-protein kinase 258 468 - -
Vvi12g0052 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vvi12g0052 503 Gene3D Phosphorylase Kinase; domain 1 163 257 - -
Vvi12g0052 503 CDD STKc_IRAK 188 455 - -
Vvi12g0052 503 MobiDBLite consensus disorder prediction 489 503 - -
Vvi12g0052 503 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0052 503 FunFam Putative receptor-like protein kinase 164 257 - -
Vvi12g0052 503 PANTHER OS01G0323000 PROTEIN 1 479 - -
Vvi12g0052 503 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Vvi12g0052 503 MobiDBLite consensus disorder prediction 474 488 - -
Vvi12g0052 503 Pfam Protein kinase domain 184 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0052 Vvi-Chr12 910730 913880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0052 17 456 Trihelix Transcription Factor Family AT1G70460 39.910 2.86e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi12g0052 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0052 - - vvi:100245375 993.801