Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0051 ATGTCTGATGAGAATAGGAGTACTCCTTACCACCACGATCCTTTCTGTCATGACCAAAATAGGGTTAGTGGGGCTGGCTTCCCATTCTTTTGTGAGAAGCCGGCCATCTTCAATCAAGGAGTGACTCCTTCACCGCAAGGCCTACACGCTACTGATCCCTCCTACATGACCTTCACTGACTACTTACATGGCTCTCTCGACTACAACACCCTTTCAAAGGCCTTTGACATGTCTTGCTCTTCATCCGAAGTCATCTCTCCAGTCGACAATGATTCGGGAAAGGGTACAGCCAGTCATGAACATCCCTCCACGCCTAATTCCTTGGACACTTCTTCTTCCACTGAGGCCATCACTGAAGATTCCGGGAAGAGTAAGCATAAGCCTGATCTGCAGGGAGGAGGGTGTGAAGATGGAGATGAAAATTCTAAGAAAGCGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAGAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAAAGATCATTTCAAGATCCCTCCATTGTGATCACTACATATGAAGGACAGCACAACCATCCATGTCCGGCTACGATAAGAGGCAATGCTGCTGCAATGTTGCCAACTTCATTTTTCTCATCTGCTACAGTGGGATCTAGCTTCCCTCAGGAGTTTCTGACTCAGATGCTTCCCCCAAATAATCAAAGCGGTCCGAACTCTATGTACTATCACAACATTACTCCCCACCACCAGCAGCAGTTCCAACTTCCTGACTACGGATTATTGCAAGATATAGTTCCCTCTTTCATCCGCAAGCAGGAGCCATGA 936 0.4647 MSDENRSTPYHHDPFCHDQNRVSGAGFPFFCEKPAIFNQGVTPSPQGLHATDPSYMTFTDYLHGSLDYNTLSKAFDMSCSSSEVISPVDNDSGKGTASHEHPSTPNSLDTSSSTEAITEDSGKSKHKPDLQGGGCEDGDENSKKANKSKKKGEKRPKEPRFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHPCPATIRGNAAAMLPTSFFSSATVGSSFPQEFLTQMLPPNNQSGPNSMYYHNITPHHQQQFQLPDYGLLQDIVPSFIRKQEP* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0051 311 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 273 IPR044810 GO:0003700
Vvi12g0051 311 Pfam WRKY DNA -binding domain 173 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0051 311 Gene3D WRKY domain 157 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0051 311 MobiDBLite consensus disorder prediction 119 147 - -
Vvi12g0051 311 SMART WRKY_cls 172 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0051 311 MobiDBLite consensus disorder prediction 86 162 - -
Vvi12g0051 311 SUPERFAMILY WRKY DNA-binding domain 164 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0051 311 MobiDBLite consensus disorder prediction 86 118 - -
Vvi12g0051 311 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0051 311 FunFam WRKY transcription factor 57 158 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0051 Vvi-Chr12 879143 881142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0051 40 311 WRKY Transcription Factor Family AT4G18170 49.164 2.16e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi12g0051 WRKY 3.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0051 - - vvi:100267688 645.58