Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0048 ATGGATGAGGCCCTTCTCTCCAGAACAGCAGCTGGTGAGGAGTCAAGCAGACCATCTCCCAGGAGAGAGTTTACCTCTAGCCTTCTTGACCTAGGTTCACCTTGGCGACAATCAACTGCCCGTATTATCACCACCGATGCTGTTATCCCTATCATCACAACACCCAATTCTTCCTTTGCTAACCTCATTTCAAACTTAAACAGGAAGAGAAATCTCACCCACCGCTCACACTCTGCTCCTTCTGTGTTTACTGACGTCAAGGAGGCTTTTCCCACTTCTGCAGACCCGAGACCTTCCCGAAAATCAATGCCTCTAATCGTCAGGCAAGCCTACATCTGGGTCATTTTGTATGGAATAGTTGGAATTCTAATATTCTGCCTGAAAAGTGGAAGTTTCAAGGGCCATCTCACAGTAAAACCAGTGGACGCCTTGTACTTTTCTGTTGTCACTCTCTGCACAATTGGTTATGGAGATATTGTTCCAGACTCGACATTTACCAAGATGTTCACTTGTGTTTTCATCTTAGTTGGATTTGGTTTCATCGATATTTTGCTCAATGGTCTGGTCACCTATGTTCTTGACAGGCAAGAGGCAGTTATGATGAGCACTGTAGATCTTAACCAATTCAACACAATGGTGCGGACATATATGATAGACACAGAAAAGGGAAGAATGAGGATAAGAATCAAAGTGGGTTTGGCATTGGCTGTTGTGGTTGTTTGCATTGCTGTGGGGACAATTGGAATACATCTTTTGGAGGGTCTGACTTGGGTTGATAGCATTTACCTATCGGTAACATCAGTGACAACCGTAGGATATGGGGATTATGCTTTTGAAACATTGGCGGGCAGGTGCTTTGCAATAATTTGGCTATTGGTAAGCACATTGGCTGTCGCTAGGGCATTTCTCTACCTCACTGAGCTGAGGATTGACAAGAGGAATCGAAGGATTGCGAAATGGGTTCTTCAGAAGAAGCTGACTCTTGGAGATTTAGTGGCTGCAGACCTTGATAATGATGGATCAATCAGCAAATCTGAGTTTGTTATATACAAACTAAAGGAGATGGGAAAGATATCAGAGAAAGACATCCTGCTGATTAGCAAACAGTTTGAGTCACTAGACCACACCAATTGTGGCAAAATTACTATTGCTGATCTCATGGATAGTGATTAA 1173 0.4339 MDEALLSRTAAGEESSRPSPRREFTSSLLDLGSPWRQSTARIITTDAVIPIITTPNSSFANLISNLNRKRNLTHRSHSAPSVFTDVKEAFPTSADPRPSRKSMPLIVRQAYIWVILYGIVGILIFCLKSGSFKGHLTVKPVDALYFSVVTLCTIGYGDIVPDSTFTKMFTCVFILVGFGFIDILLNGLVTYVLDRQEAVMMSTVDLNQFNTMVRTYMIDTEKGRMRIRIKVGLALAVVVVCIAVGTIGIHLLEGLTWVDSIYLSVTSVTTVGYGDYAFETLAGRCFAIIWLLVSTLAVARAFLYLTELRIDKRNRRIAKWVLQKKLTLGDLVAADLDNDGSISKSEFVIYKLKEMGKISEKDILLISKQFESLDHTNCGKITIADLMDSD* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0048 390 SUPERFAMILY EF-hand 333 387 IPR011992 -
Vvi12g0048 390 SUPERFAMILY Voltage-gated potassium channels 103 192 - -
Vvi12g0048 390 Gene3D - 97 199 - -
Vvi12g0048 390 Pfam Ion channel 237 305 IPR013099 -
Vvi12g0048 390 Pfam Ion channel 113 192 IPR013099 -
Vvi12g0048 390 PRINTS Two pore domain K+ channel signature 149 177 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0048 390 PRINTS Two pore domain K+ channel signature 269 278 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0048 390 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Vvi12g0048 390 FunFam Two-pore potassium channel 2-like 105 202 - -
Vvi12g0048 390 SUPERFAMILY Voltage-gated potassium channels 217 325 - -
Vvi12g0048 390 FunFam Two-pore potassium channel 3 214 328 - -
Vvi12g0048 390 MobiDBLite consensus disorder prediction 1 25 - -
Vvi12g0048 390 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 141 363 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0048 390 Gene3D - 201 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0048 Vvi-Chr12 793725 797804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0048 74 388 Ion Channels AT4G18160 55.205 1.02e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0048 K05389 - vvi:100262479 753.051