Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0047 ATGGATGAGGCCCTTCTCTCCAGACAAGCAGTGGTAGGGGAGTCAAGCAGACCATCTCCCAGGAGAGAGTTTGCCTCCAGCATTCTTGACCCTGGTTCACATTGGCGACAATCGACTGCCCGTATTACCACCACAACACCCACTTCTTTCTTTGTTGACCTCATTTCAAACTTAAACAGGAAGAGAAATCTCCCCCGCCGCTCACACTCTGCTCCTTCTGTGTTTACCTACGCCAAGGAGGACCCGAGACCTTCCCAAAAATCAATGCCTCTAATCGTCAGGCAAGCCTTCATCTGGGTCATTTTGTATTGTATAGTTGGAATTGTAATAATTTGCCTGAAAAGTGGAAGTTTCAAGGGCCATCTCACTGTAAAACCAGTGGACGCCTTGTATTTTTCTGTCGTCACTCTCTGCACAATTGGTTATGGAGATATTGTTCCAGACACGACATTTACCAAGATGTTCACTTGTGTTTTCATCTTAGTTGGCTTTGGTATCATCCATATTTTGCTCAATGGTCTGCTCACCTATGTTCTTGACAGGCAAGAGGCAGTTATGATGAGCACTGTAGATCTGAACCAATGCCATACAATGATACAGACATATATGATAGACCCAGAAAAGGGAAGAATAAGGATAAGAATCAAAGTGGTTTTGGCATTGGCTGTTGTGATTGTTTGCATTGCTGTGGGGACCATTGGAATACATCTTTTGGAGGATCTGACTTGGGTTGATAGTGTTTACCTATCGGTAACATCAGTGACAACAGTAGGATATGGGGATTATGCATTTGAAACATTGGCGGGCAGGTTTAGTGGCTGCAGAACCTTGATAATGATGGATCAATCAGCAAATCTGAGCTTAGCCACTTTCTATGTGGGTAGGGGTAACCCTCATTGCATGATATTTAATTCTTCTCATTTGCTTGTTATTGGTCCCAACCTAGCTACTAGCCTTTGA 960 0.4375 MDEALLSRQAVVGESSRPSPRREFASSILDPGSHWRQSTARITTTTPTSFFVDLISNLNRKRNLPRRSHSAPSVFTYAKEDPRPSQKSMPLIVRQAFIWVILYCIVGIVIICLKSGSFKGHLTVKPVDALYFSVVTLCTIGYGDIVPDTTFTKMFTCVFILVGFGIIHILLNGLLTYVLDRQEAVMMSTVDLNQCHTMIQTYMIDPEKGRIRIRIKVVLALAVVIVCIAVGTIGIHLLEDLTWVDSVYLSVTSVTTVGYGDYAFETLAGRFSGCRTLIMMDQSANLSLATFYVGRGNPHCMIFNSSHLLVIGPNLATSL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0047 319 FunFam Two-pore potassium channel 2-like 91 188 - -
Vvi12g0047 319 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 127 293 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0047 319 PRINTS Two pore domain K+ channel signature 135 163 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0047 319 PRINTS Two pore domain K+ channel signature 255 264 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g0047 319 SUPERFAMILY Voltage-gated potassium channels 209 273 - -
Vvi12g0047 319 Pfam Ion channel 223 271 IPR013099 -
Vvi12g0047 319 Pfam Ion channel 99 177 IPR013099 -
Vvi12g0047 319 Gene3D - 83 183 - -
Vvi12g0047 319 Gene3D - 190 280 - -
Vvi12g0047 319 SUPERFAMILY Voltage-gated potassium channels 89 178 - -
Vvi12g0047 319 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0047 Vvi-Chr12 775443 784939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0047 67 271 Ion Channels AT4G18160 46.698 5.03e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0047 K05389 - vvi:100252233 497.278