Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g0047 | ATGGATGAGGCCCTTCTCTCCAGACAAGCAGTGGTAGGGGAGTCAAGCAGACCATCTCCCAGGAGAGAGTTTGCCTCCAGCATTCTTGACCCTGGTTCACATTGGCGACAATCGACTGCCCGTATTACCACCACAACACCCACTTCTTTCTTTGTTGACCTCATTTCAAACTTAAACAGGAAGAGAAATCTCCCCCGCCGCTCACACTCTGCTCCTTCTGTGTTTACCTACGCCAAGGAGGACCCGAGACCTTCCCAAAAATCAATGCCTCTAATCGTCAGGCAAGCCTTCATCTGGGTCATTTTGTATTGTATAGTTGGAATTGTAATAATTTGCCTGAAAAGTGGAAGTTTCAAGGGCCATCTCACTGTAAAACCAGTGGACGCCTTGTATTTTTCTGTCGTCACTCTCTGCACAATTGGTTATGGAGATATTGTTCCAGACACGACATTTACCAAGATGTTCACTTGTGTTTTCATCTTAGTTGGCTTTGGTATCATCCATATTTTGCTCAATGGTCTGCTCACCTATGTTCTTGACAGGCAAGAGGCAGTTATGATGAGCACTGTAGATCTGAACCAATGCCATACAATGATACAGACATATATGATAGACCCAGAAAAGGGAAGAATAAGGATAAGAATCAAAGTGGTTTTGGCATTGGCTGTTGTGATTGTTTGCATTGCTGTGGGGACCATTGGAATACATCTTTTGGAGGATCTGACTTGGGTTGATAGTGTTTACCTATCGGTAACATCAGTGACAACAGTAGGATATGGGGATTATGCATTTGAAACATTGGCGGGCAGGTTTAGTGGCTGCAGAACCTTGATAATGATGGATCAATCAGCAAATCTGAGCTTAGCCACTTTCTATGTGGGTAGGGGTAACCCTCATTGCATGATATTTAATTCTTCTCATTTGCTTGTTATTGGTCCCAACCTAGCTACTAGCCTTTGA | 960 | 0.4375 | MDEALLSRQAVVGESSRPSPRREFASSILDPGSHWRQSTARITTTTPTSFFVDLISNLNRKRNLPRRSHSAPSVFTYAKEDPRPSQKSMPLIVRQAFIWVILYCIVGIVIICLKSGSFKGHLTVKPVDALYFSVVTLCTIGYGDIVPDTTFTKMFTCVFILVGFGIIHILLNGLLTYVLDRQEAVMMSTVDLNQCHTMIQTYMIDPEKGRIRIRIKVVLALAVVIVCIAVGTIGIHLLEDLTWVDSVYLSVTSVTTVGYGDYAFETLAGRFSGCRTLIMMDQSANLSLATFYVGRGNPHCMIFNSSHLLVIGPNLATSL* | 320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g0047 | 319 | FunFam | Two-pore potassium channel 2-like | 91 | 188 | - | - | |
Vvi12g0047 | 319 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 127 | 293 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Vvi12g0047 | 319 | PRINTS | Two pore domain K+ channel signature | 135 | 163 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Vvi12g0047 | 319 | PRINTS | Two pore domain K+ channel signature | 255 | 264 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Vvi12g0047 | 319 | SUPERFAMILY | Voltage-gated potassium channels | 209 | 273 | - | - | |
Vvi12g0047 | 319 | Pfam | Ion channel | 223 | 271 | IPR013099 | - | |
Vvi12g0047 | 319 | Pfam | Ion channel | 99 | 177 | IPR013099 | - | |
Vvi12g0047 | 319 | Gene3D | - | 83 | 183 | - | - | |
Vvi12g0047 | 319 | Gene3D | - | 190 | 280 | - | - | |
Vvi12g0047 | 319 | SUPERFAMILY | Voltage-gated potassium channels | 89 | 178 | - | - | |
Vvi12g0047 | 319 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi12g0047 | Vvi-Chr12 | 775443 | 784939 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi12g0047 | 67 | 271 | Ion Channels | AT4G18160 | 46.698 | 5.03e-59 | 194 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g0047 | K05389 | - | vvi:100252233 | 497.278 |