Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0042 ATGGCAGGAGGAGGTGGCGGAGCAGATCCAATGGTCCCTTCTATTGGGTCGAAAAGTGCCATGGATAGGAACCAAGAACAGGTCAAGGGTAGCAATCACAGGGCAGGCATTGATGCCATACTCATGGCTCCCAAAGTTCCAAAAGCAATGCCAGCAGTTCCTTTGGCATCTGAAGGTGAGGCCACCCGCCGGCCTCGTGGCAGGCCAGCAGGCTCAAAGAACAAGCCAAAACCACCCATCATCATCACCCGAGACAGCGCTAATGCTCTTAGGGCTCATGCCATGGAGGTGAGCTCTGGTTGTGACGTGAGTGAGAGCTTAGCCAACTTTGCCAGGAGGAAGCAACGCGGGATTTGCATCCTCAGTGGGAGCGGGTGTGTGACCAACGTAACACTTCGGCAACCTGCCTCTTCTGGGGCCATAGTCACCCTCCACGGCCGGTTTGAGATCCTGTCTTTGCTGGGTTCAATATTGCCCCCACCTGCACCACCTGGGATCACAGGCCTGACCATTTACTTAGCTGGGGCTCAGGGGCAAGTTGTGGGCGGAGGTGTGGTTGGTGCACTCATAGCTTCTGGACCTGTATTTGTCATGGCTGCATCCTTCATGAATGCAACATTCGATCGTCTGCCTTTGGATGATGATGAAGTAACCACTGCTGTGCAGAGCCAGCATTACCAGAATGGTCGTCACCATCACATTGATATGTCGGATTTGTATGGGATTCCCCCAAACTTGCTCACAAATGGTACCATGCTCCCAGAGATATACTCTTGGGCACCTGGGCGAACTCTATCCAAAACCTAG 807 0.5341 MAGGGGGADPMVPSIGSKSAMDRNQEQVKGSNHRAGIDAILMAPKVPKAMPAVPLASEGEATRRPRGRPAGSKNKPKPPIIITRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGGVVGALIASGPVFVMAASFMNATFDRLPLDDDEVTTAVQSQHYQNGRHHHIDMSDLYGIPPNLLTNGTMLPEIYSWAPGRTLSKT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0042 268 Gene3D - 90 232 - -
Vvi12g0042 268 CDD DUF296 91 173 IPR005175 -
Vvi12g0042 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 203 IPR005175 -
Vvi12g0042 268 MobiDBLite consensus disorder prediction 1 34 - -
Vvi12g0042 268 MobiDBLite consensus disorder prediction 50 80 - -
Vvi12g0042 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 230 IPR014476 GO:0003680
Vvi12g0042 268 FunFam AT-hook motif nuclear-localized protein 90 231 - -
Vvi12g0042 268 ProSiteProfiles PPC domain profile profile. 87 225 IPR005175 -
Vvi12g0042 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0042 Vvi-Chr12 737404 738210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0042 14 267 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 67.188 3.81e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0042 - - vvi:100253941 481.87