Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0037 ATGGACGTTCCATATTGTTTACTTAATTTAATCTCTTTTAGCTCTGTCTTTATGTTCCAAACTATTTTTATTGCCTTTTCTTTTTTCTGTTTGCTATTTTGGAATTTGGAGGGACTTACACCCATCTTGATATGCTTGCAGTTCTATGATCTATTAAATATTTTTGACCTCAATGGACTTCCCTCAGAAGAGAACCCCTATCTATTTAATGGTGATTTTGTGGATAGAGGATCCTTTTCTTTAGAGGTCATCCTCACACTGTTTGCATTTAAGTGCATGTCTCCATCAGCTATATATCTCTCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAAGGGGAGGTCAGATCCAAGTTGAGTGAAACATTTGTGGAACTCTTTGCCGAAGTGTTCTGTTGTTTACCTTTGGCTCATGTAATAAACGAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGGATTGATGTGTGAACTGCTGTGGAGTGATCCCCAACCTTACCCTGGAAGAGGCCCTAGCAAGCGGGGTGTAGGTCTTTCCTTTGGTGTAGATGTGACAAAAAGATTCTTGCAAGAAAACAATCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGA 900 0.4033 MDVPYCLLNLISFSSVFMFQTIFIAFSFFCLLFWNLEGLTPILICLQFYDLLNIFDLNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPYPGRGPSKRGVGLSFGVDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0037 299 SUPERFAMILY Metallo-dependent phosphatases 47 293 IPR029052 -
Vvi12g0037 299 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 47 292 - -
Vvi12g0037 299 Gene3D - 44 298 IPR029052 -
Vvi12g0037 299 CDD MPP_PP5_C 47 292 IPR041753 -
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 220 240 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 100 124 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 134 160 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 164 191 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 37 64 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 67 94 IPR006186 GO:0016787
Vvi12g0037 299 PRINTS Serine/threonine phosphatase family signature 242 258 IPR006186 GO:0016787
Vvi12g0037 299 SMART pp2a_7 13 281 IPR006186 GO:0016787
Vvi12g0037 299 Pfam Calcineurin-like phosphoesterase 47 231 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0037 Vvi-Chr12 639882 644110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0037 47 226 Calmodulin-binding Proteins AT5G63870 34.112 9.59e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0037 K04460 - vvi:100259074 522.316