Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0036 ATGGCTGAGAAAGAAGAGAAGGAAAGGGTGTGTATCACAGGTGCAGGAGGTTACATAGCTTCATGGGTTGTCAAGCTTCTGCTTTCAAAGGGTTTTATTGTTCATGGAACTGTCAGAGAGCCATGTGATGGAAAGAACAGTCATCTGAAAAAATTGGAGAAGGCTTCAGAGAATTTGAAACTGTTCAAGGCAGACTTGTTGGACTACGATGGCCTTTGTGCTGCCATTGATGGTTGCACTGGAGTCTTCCATATTGCCAGCCCTAATCTTTACCCCAAAGTATCCAATCCCCAGGCAGAAGTGGTAGAGCCTGCTGTAGTGGGTACGATAAATATACTAAAGGCATGTGAGACGGCCAGAGTGAAGAAAGTTGTGGTAGTGTCATCTGTTGCTGCAGTCATCCTCAACCCAAGCTGGCCTAAGGATCGTCCAAAGGATGAAGAATGCTGGTCTGACCCTGAGATTTGTAAGGCACCCGAGAACTATTATTTCCTATCGAAAACACTGGCAGAGAGTGAAACTTGGAAGCATGCAAGGACAAGTGAATTGGACATTGCAACAGTTTGTCCATCCTTTGTTTTCGGGCCCATGTTGCAACCCACACTGAATGCCAGCAGCTACGTTCTCTTAACATATTTGAAAGATGGACCTGAATCCGTGGAAAATAAAGATCGTCCTATTATTGATGTTCGTGATTTAGCTGAAGCAATTCTTTTGGTATATGAGAAACCTGAGGCACAAGGAAGATACATATGTTCATCATATACAATATCAACACAAGAATTAGTAGAGAAGTTGAAGAGTATGTATCCTAATTACAATTATCCTAAAAGCTACACTGCAGTGGAGGGTTTGAAGCTAAGTTCGGAGAAGTTGCAGGGTTTGGGATGGAAGTATCGGCCACTAGAAGAGACTCTTGTGGATGCTGTTAAAAGCTTTCAAGAGAATGGCTTCTTGCCAAAGCACTAG 969 0.4324 MAEKEEKERVCITGAGGYIASWVVKLLLSKGFIVHGTVREPCDGKNSHLKKLEKASENLKLFKADLLDYDGLCAAIDGCTGVFHIASPNLYPKVSNPQAEVVEPAVVGTINILKACETARVKKVVVVSSVAAVILNPSWPKDRPKDEECWSDPEICKAPENYYFLSKTLAESETWKHARTSELDIATVCPSFVFGPMLQPTLNASSYVLLTYLKDGPESVENKDRPIIDVRDLAEAILLVYEKPEAQGRYICSSYTISTQELVEKLKSMYPNYNYPKSYTAVEGLKLSSEKLQGLGWKYRPLEETLVDAVKSFQENGFLPKH* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0036 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 310 - -
Vvi12g0036 322 CDD FR_SDR_e 10 297 - -
Vvi12g0036 322 Gene3D - 1 322 - -
Vvi12g0036 322 Pfam NAD dependent epimerase/dehydratase family 10 247 IPR001509 -
Vvi12g0036 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 314 IPR036291 -
Vvi12g0036 322 FunFam NAD(P)-binding Rossmann-fold superfamily protein 3 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0036 Vvi-Chr12 625521 627933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0036 6 315 Monolignol Biosynthesis Gene Families AT2G33590 59.295 2.13e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0036 - - vvi:100264246 644.039