Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0035 ATGATGAACATAATCTCGAGGAAGTCATCTTCCTTGGCGTCTGTTAAGGCACCGATTCGAGCCCTGGCCTCGGTGCCTCATGTACATTCTCTCCTCCACTTCCACATCCACCCTCCAATTTCCACCTCAGCTTCCGATGCAGTTGTGGCTAGAAACGTTGTTACTTCTGCCGCCCCAATTCCACCGCTGTCTGGTCTACTCGGGTTCAGCGGTTTTAGGGTGAGGAACTTTCGCTCCCAATCTGGGCCCTTGGATTTCAGGGCTTCTGTGGTGTCTCGGGCTGAGTACGCCGTTGCTGATTTTTCCGATGAGGAGAAGTCCTCCAAAGGAGGTGACGAGGGTCTTGAGATATCGAAACTTGGCATTGCTCAAGAAATCGTTTCTGCTTTGGCCAACAAGGGTATCACTAAGCTCTTCCCTATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGACGTGGGAGGAATCCGTTGGCCTTGGTTTTGGCTCCAACAAGAGAACTTGCACGGCAAGTGGAGAAGGAATTCTGTGAATCTGCCCCCAATTTGGATACACTTTGTGTTTATGGGGGTACCCCCATCTCACGCCAAATGAATTCCCTGGACTATGGTGTTGATGTAGTAGTTGGCACACCTGGTCGCATTATCGATCTGATTAAGAGAGGTGCTTTAAATTTGTCAGAAGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTGCAGTGGGCTTTGAGGAAGATGTTGAAATGATTTTAGAGAAGTTGCCACAAAATCGTCAGAGCATGATGTTCTCTGCAACAATGCCAAGTTGGATTAGGAAGCTTACCCAGAAGTACCTAAAAAATCCATTAACTATTGATCTTGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACAGAACATGCAAAAGGTGGAAAATGTATTGTTTTCACTCAAACAAAACGCGATGCTGATCGATTGGCATATGCTATGGCAAGAAACTTCAGATGTGAGGCTCTGCATGGGGATATCTCACAGAGTCAGAGGGAAAGAACCCTTTCAGGATTCCGAGATGGGCACTTCAATGTATTAGTTGCCACAGATGTTGCTGCTCGTGGGCTTGATATACCTAATGTTGACCTGATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATGCAGAACAGCAAGCCAGGACTGTCCGGTTTATTGAGCGAGATATAGGATGCAAATTCTCAGAGCTCCCTAGGATTGCTATTGAGGGTGGTAGCAGAGACATGTTTAGTGACATGGGTGGTGGTGGTGATGGTGGCCGGTTTGGCTCTTTTGGAAGTAGGGGAGGTGGTCGTGTTGGTGGCGGATTTGGCCGATCTGGATCATCATTTGGTCGTAGTGGTGGATATGGTGAATCTGGCTCTGGACGTTCTGGTTCCTTTGGCGGATTTGGCTCAAGTCGATCGGGTGGTGGATCTAGCTCTAGCCGTTCAGGCAATTTTGGTGGCTCTAGTTTTGGTCGATCAGGTGAATTTGGGGACACTATTGGTTCAGACCGATCAAGTGGTTTTGGGAACTCTAGTGGCTCACATCGATCAAGTGGTTTTGGGAATTTTGGTGGATCAGATCGTTCGAGTGGTTTCAGAAATCCTGGTTCAGGTCGTTCTAGTGGATCTGATTCTACTCGTTTAAGCCGTACAAGTGGTGGCTTCAATGATTCGTTTTCAAGCCGTTTTGGTGACTTTGGAGATGATAGGAGTAATAATGGTCAGAGCACTGGGAGAAGATCATTCTAA 2001 0.4658 MMNIISRKSSSLASVKAPIRALASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAPIPPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAEYAVADFSDEEKSSKGGDEGLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDIGCKFSELPRIAIEGGSRDMFSDMGGGGDGGRFGSFGSRGGGRVGGGFGRSGSSFGRSGGYGESGSGRSGSFGGFGSSRSGGGSSSSRSGNFGGSSFGRSGEFGDTIGSDRSSGFGNSSGSHRSSGFGNFGGSDRSSGFRNPGSGRSSGSDSTRLSRTSGGFNDSFSSRFGDFGDDRSNNGQSTGRRSF* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0035 666 CDD SF2_C_DEAD 345 463 - -
Vvi12g0035 666 FunFam Nucleolar RNA helicase II 342 502 - -
Vvi12g0035 666 Gene3D - 334 497 IPR027417 -
Vvi12g0035 666 Pfam Helicase conserved C-terminal domain 346 454 IPR001650 -
Vvi12g0035 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 320 IPR014001 -
Vvi12g0035 666 MobiDBLite consensus disorder prediction 583 666 - -
Vvi12g0035 666 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 109 486 - -
Vvi12g0035 666 SMART helicmild6 374 454 IPR001650 -
Vvi12g0035 666 MobiDBLite consensus disorder prediction 501 666 - -
Vvi12g0035 666 MobiDBLite consensus disorder prediction 547 573 - -
Vvi12g0035 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 476 IPR027417 -
Vvi12g0035 666 SMART ultradead3 134 337 IPR014001 -
Vvi12g0035 666 Gene3D - 116 324 IPR027417 -
Vvi12g0035 666 Pfam DEAD/DEAH box helicase 139 308 IPR011545 GO:0003676|GO:0005524
Vvi12g0035 666 FunFam ATP-dependent RNA helicase RhlE 104 323 - -
Vvi12g0035 666 CDD DEADc 126 321 - -
Vvi12g0035 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 493 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0035 Vvi-Chr12 606597 613525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0035 103 486 Eukaryotic Initiation Factors Gene Family AT3G19760 33.504 2.01e-68 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0035 - - vvi:100250610 1089.33