Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0034 ATGGGAAAGAATTCTGGACTCTTTCCTCATACTTCAGTGTTTCTGATGCACTGTTGGGTGGCTTTCTTATCACCAACTGCCAGCTTAGCCAATTTAGCAGATGAGCTTTCTCTTCTTGCCATGAAAGCCCATATAACATCTGACTCCAAAGACGTTTTGGCAACAAACTGGTCCACCACAACCTCCTACTGCAATTGGTTCGGTGTCTCTTGCGATGCTGCTCGCCAAAGAGTGATAGCCTTGGATCTTTCTAACATGGATCTTGAAGGAACCATTGCACCCCAAGTTGGCAACCTCTCCTTCCTTGTTACCCTTGATCTTAGCAATAACAGCTTTCATGCCTCTATTCCCAATGAGATAGCTAAGTGCAGAGAACTACGGCAGTTGTATCTATTCAACAACAGACTCACTGGAAGCATTCCACAAGCCATTGGTAACTTATCCAAACTTGAACAACTGTATCTTGGAGGAAACCAGTTAACAGGTGAAATTCCAAGGGAGATAAGTCATCTTCTTAGTCTCAAGATATTATCATTTCGAAGTAACAACCTCACCGCCTCAATACCATCTGCCATTTTCAACATATCTTCTCTGCAGTATATTGGTCTTACATACAATAGTCTCTCCGGGACTCTTCCTATGGATATGTGCTACAGTCTTCCAAAGCTTAGGGGGCTTTATCTTTCTGGCAATCAGCTGAGTGGAAAAATCCCCACCAGCTTAGGTAAATGTGGAAGACTTGAAGAAATTTCCCTATCATTCAATGAATTCATGGGAAGCATACCAAGAGGAATTGGCAGCTTGTCAGTGCTTGAGGTTTTATATCTTGGTAGTAATAACTTGGAAGGAGAAATACCTCAAACACTCTTCAACCTATCTTCGCTGAGGAATTTTGAACTTGGAAGCAATAACCTCGGAGGTATTCTGCCAGCGGATATGTGTTATAGTCTTCCTAGACTCCAAGTCATTAATCTTTCACAGAATCAGCTTAAAGGAGAAATACCGCCTAGTTTGTCAAATTGTGGAGAGCTTCAAGTGCTAGGATTATCAATCAATGAGTTCATTGGAAGAATACCCAGCGGCATTGGCAACTTATCTGGGATAGAGAAGATATATCTCGGAGGTAACAACTTGATGGGAACAATCCCATCTTCATTTGGTAATTTATCCGCACTGAAGACGTTGTATCTGGAAAAAAACAAGATCCAAGGTAACATCCCCAAAGAGTTGGGTCATCTTTCAGAATTGCAGTACTTGAGTCTTGCCTCCAATATTTTAACAGGGTCTGTACCAGAAGCAATCTTTAACATCTCAAACCTGCAGTTCATCGTGCTAGCAGATAATCACCTTTCAGGCAATCTTCCATCAAGCATTGGCACTTCCCTCCCTCAACTTGAAGAACTTCTGATTGGAGGCAACTATTTAAGTGGAATAATTCCAGCATCTATTTCCAATATTACCAAACTCACCCGCCTGGATCTATCCTACAACCTCCTAACTGGTTTTGTGCCAAAAGATCTAGGGAACTTGAGATCACTCCAACACCTAGGATTTGGAAATAATCAGTTATCTGGTGAATACTCAACCTCCGAGCTTGGCTTTCTAACTTCTTTGTCAAATTGCAAATTTTTGAGAAATTTGTGGATACAAGATAACCCTCTAAAAGGTACTCTTCCAAATTCATTAGGGAATCTCTCTTTGTCTCTTCAAAGTATCAATGCATCAGCTTGCCAATTCAAAGGTGTGATTCCAGCAGGAATTGGTAATTTGACCAACTTGATAGAATTGGGCCTCGGAGATAATGACCTGACAGGAATGATTCCTACGACACTGGGACAACTAAAGAAGCTCCAGCGGCTGTACATTGCAGGAAATAGAATACATGGTTCAGTTCCTAATGGTATAGGCCACTTGGCAAACTTGGTTTACTTATTTTTGAGTTCAAATCAACTCTCTGGATTAGTACCTTCATCGCTGTGGAGCCTGAATCGTCTTTTGGTTGTTAACTTGTCTTCAAATTTCTTGACGGGTGATCTACCAGTGGAAGTCGGAAGCATGAAAACCATAACCAAATTGGACCTATCACAGAACCAGTTTTCAGGCCACATTCCAAGCACCATGGGACAACTTGGGGGCTTGGTTGAACTCTCCTTATCCAAAAACAGACTGCAGGGCCCCATACCCCGGGAGTTTGGTAATTTGTTAAGCTTGGAGTCCTTGGATCTGTCCTGGAACAATCTTTCTGGTGCCATTCCGAGGTCACTAGAAGCTCTTGTCTCTCTCAAATATCTAAATGTTTCTTTCAATAAGCTAGAAGGAGAAATTCCTGATAAAGGACCTTTTGCAAACTTTACGACTGAGTCTTTCATCTCCAATGCGGGACTTTGTGGAGCACCTCGATTTCAGATCATAGAATGTGAGAAAGACGCTAGTGGGCAATCACGGAATGCAACATCCTTCCTCTTGAAATGTATTCTAATACCAGTTGTAGCAGCGATGGTTTTTGTGGCTTTCGTTGTATTGATCCGCAGGAGACGAAGTAAGTCAAAAGCACCAGCTCAAGTCAATTCATTCCATCTGGGAAAGCTTAGAAGGATATCGCATCAGGAACTTATTTATGCAACCAACTACTTCGGTGAAGACAACATGATTGGAACAGGAAGCCTAGGCATGGTACACAGAGGGGTATTATCTGACGGGTCGATTGTTGCAGTAAAGGTTTTCAATTTAGAATTCCAAGGAGCATTCAAGAGTTTTGACGCAGAATGTGAAATAATGCGAAATATTCAGCATCGTAATCTTGTCAAGATAATCAGTAGTTGCTCAATTCTCAACTTCAAAGCCTTGGTGCTGGAGTATATGCCTAATGGGAGCCTTGAGAAGTGGCTCTACTCTCACAATTACTGTCTGAATCTTGTCCAAAGACTAAATATTATGATAGATGTGGCATCAGCACTTGAGTATCTACATCATGATTTTTCAGTTAATCCTGTGGTGCATTGTGATTTGAAGCCCAACAATGTTCTGTTAGACGAGGAGATGGTTGCGCGCTTAGGGGATTTTGGAATTTCAAAATTGTTGACGGAAACAGAGTCCATGGAGCAAACAAGAACCTTAGGAACCATTGGGTACATGGCACCAGAGTATGGGTCAGAAGGAATAGTATCTACAAGGGGCGATGTGTACAGCTACGGGATTATGATGATGGAAACATTTGCAAGGAAGAAGCCGACGGATGAAATGTTTGGTGGGGAGGTAACGCTGAGGAGTTGGGTGGAGTCATTAGCGGGTAGAGTGATGGAGGTTGTAGATGGGAATCTAGTGAGGAGGGAGGACCAACATTTTGGCATCAAAGAGAGCTGCCTGCGCTCCATCATGGCATTAGCTTTGGAATGTACAACAGAGTCACCTAGAGACAGGATTGACATGAAGGAGGTTGTGGTCAGACTTAAGAAGATCAGAATCAAATTGCTCGTCATATGA 3483 0.4229 MGKNSGLFPHTSVFLMHCWVAFLSPTASLANLADELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTIAPQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQLYLGGNQLTGEIPREISHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGLTYNSLSGTLPMDMCYSLPKLRGLYLSGNQLSGKIPTSLGKCGRLEEISLSFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLSSLRNFELGSNNLGGILPADMCYSLPRLQVINLSQNQLKGEIPPSLSNCGELQVLGLSINEFIGRIPSGIGNLSGIEKIYLGGNNLMGTIPSSFGNLSALKTLYLEKNKIQGNIPKELGHLSELQYLSLASNILTGSVPEAIFNISNLQFIVLADNHLSGNLPSSIGTSLPQLEELLIGGNYLSGIIPASISNITKLTRLDLSYNLLTGFVPKDLGNLRSLQHLGFGNNQLSGEYSTSELGFLTSLSNCKFLRNLWIQDNPLKGTLPNSLGNLSLSLQSINASACQFKGVIPAGIGNLTNLIELGLGDNDLTGMIPTTLGQLKKLQRLYIAGNRIHGSVPNGIGHLANLVYLFLSSNQLSGLVPSSLWSLNRLLVVNLSSNFLTGDLPVEVGSMKTITKLDLSQNQFSGHIPSTMGQLGGLVELSLSKNRLQGPIPREFGNLLSLESLDLSWNNLSGAIPRSLEALVSLKYLNVSFNKLEGEIPDKGPFANFTTESFISNAGLCGAPRFQIIECEKDASGQSRNATSFLLKCILIPVVAAMVFVAFVVLIRRRRSKSKAPAQVNSFHLGKLRRISHQELIYATNYFGEDNMIGTGSLGMVHRGVLSDGSIVAVKVFNLEFQGAFKSFDAECEIMRNIQHRNLVKIISSCSILNFKALVLEYMPNGSLEKWLYSHNYCLNLVQRLNIMIDVASALEYLHHDFSVNPVVHCDLKPNNVLLDEEMVARLGDFGISKLLTETESMEQTRTLGTIGYMAPEYGSEGIVSTRGDVYSYGIMMMETFARKKPTDEMFGGEVTLRSWVESLAGRVMEVVDGNLVRREDQHFGIKESCLRSIMALALECTTESPRDRIDMKEVVVRLKKIRIKLLVI* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0034 1160 ProSiteProfiles Protein kinase domain profile. 878 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0034 1160 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 535 810 - -
Vvi12g0034 1160 FunFam Piriformospora indica-insensitive protein 2 214 311 - -
Vvi12g0034 1160 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Vvi12g0034 1160 Gene3D Transferase(Phosphotransferase) domain 1 954 1157 - -
Vvi12g0034 1160 SUPERFAMILY L domain-like 34 310 - -
Vvi12g0034 1160 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 312 534 - -
Vvi12g0034 1160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Vvi12g0034 1160 Gene3D Ribonuclease Inhibitor 33 314 IPR032675 -
Vvi12g0034 1160 SMART LRR_typ_2 638 661 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 171 195 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 486 509 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 590 613 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 317 341 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 99 123 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 710 733 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 758 782 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 614 637 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 734 757 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 389 413 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 220 244 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 268 292 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 147 170 IPR003591 -
Vvi12g0034 1160 SMART LRR_typ_2 462 485 IPR003591 -
Vvi12g0034 1160 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 954 1159 - -
Vvi12g0034 1160 SUPERFAMILY L domain-like 311 564 - -
Vvi12g0034 1160 Gene3D Ribonuclease Inhibitor 315 430 IPR032675 -
Vvi12g0034 1160 SUPERFAMILY Protein kinase-like (PK-like) 854 1150 IPR011009 -
Vvi12g0034 1160 Gene3D Phosphorylase Kinase; domain 1 849 953 - -
Vvi12g0034 1160 Gene3D Ribonuclease Inhibitor 431 529 IPR032675 -
Vvi12g0034 1160 SUPERFAMILY L domain-like 537 799 - -
Vvi12g0034 1160 CDD STKc_IRAK 884 1153 - -
Vvi12g0034 1160 Pfam Protein kinase domain 881 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0034 1160 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 189 - -
Vvi12g0034 1160 Pfam Leucine Rich Repeat 319 341 IPR001611 GO:0005515
Vvi12g0034 1160 FunFam Serine-threonine protein kinase plant-type 859 953 - -
Vvi12g0034 1160 Gene3D Ribonuclease Inhibitor 530 814 IPR032675 -
Vvi12g0034 1160 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 409 1152 - -
Vvi12g0034 1160 SMART LRR_sd22_2 734 760 - -
Vvi12g0034 1160 SMART LRR_sd22_2 147 170 - -
Vvi12g0034 1160 SMART LRR_sd22_2 413 439 - -
Vvi12g0034 1160 SMART LRR_sd22_2 638 656 - -
Vvi12g0034 1160 SMART LRR_sd22_2 486 507 - -
Vvi12g0034 1160 SMART LRR_sd22_2 365 391 - -
Vvi12g0034 1160 SMART LRR_sd22_2 171 197 - -
Vvi12g0034 1160 SMART LRR_sd22_2 268 294 - -
Vvi12g0034 1160 SMART LRR_sd22_2 614 637 - -
Vvi12g0034 1160 Pfam Leucine rich repeat 173 233 IPR001611 GO:0005515
Vvi12g0034 1160 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vvi12g0034 1160 Pfam Leucine rich repeat 463 523 IPR001611 GO:0005515
Vvi12g0034 1160 Pfam Leucine rich repeat 368 424 IPR001611 GO:0005515
Vvi12g0034 1160 Pfam Leucine rich repeat 713 771 IPR001611 GO:0005515
Vvi12g0034 1160 SMART serkin_6 878 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0034 Vvi-Chr12 590406 594702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0034 37 1156 Receptor kinase-like Gene Family AT5G46330 34.987 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi12g0034 Pkinase 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0034 - K13420 vvi:100241966 2241.08