Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0027 ATGGGAGAGAAGAAAAGAGTGTGTGTTACAGGTGCCGGGGGATATGTAGCTTCATGGGTTGTAAAACTTTTACTCTCTAAGGGTTTCATTGTTCATGGAACTGTCAGATACCCATATGACGAAAGGAATAGCCATCTGAAAAAGTTGGAGAAGGCTTCAGAGAATTTGAAGCTGTTCAAGGCAGACTTGATGGACTTCCAAGGCCTTTTCGCTGCTACTGATGGTTGCACTGGGGTTTTCCATATTGCCAGCCCTGTTCCTTCTGCCAAAGTGTCCAATCCCCAGCTGGAAGTGGTAGAACCTGCTGTAATTGGTACACGCAATATTATAAAGGCATGTGAGATGGCCAAAGTGAAGAAACTTGTGGTAGTTTCATCTCTTGCTGCAGTTGTTCTCAACCCAAAATGGCCTAAGGATCGTCCCAAGGATGAGGAATGTTGGTCCGACCCTGAATTTTGTAAGACAATTGAGTACCCTTATTTCCTTTCGAAAACACTAGCGGAGAGTGAAGCTTTGGAGTATGCAAAGACAAGTGAATTCAACATTGTAACAGTTTGTCCATCCCTTGTATTGGGACCCATGTTGCAGTCGACACTAAATGCCACTAGCGCCTTTCTCTTATCATATTTGAAAGATGGACATGAATCAGTAGAAAACAAAGATCGTCCCGTCATCGATGCACGTGATTTGGCTGAAGCGATTCTGCTAGTATATGAGAAACCTGAGGCACATGGAAGATATATATGCTCATCATATACAATATCAACACAAGAGTTAGTAGAAAAGCTGAAGAGCATGTATCCTAATTATAGTTATCCTAAAAGCTACATTGAGGGAGAGGAACATTTGAAGCTAAGTTCACAGAAGTTGCAGAGTTTGGGATGGAAGTATAGGCCACTGGAAGAGACACTTGTGGATGCTGTTAAAAGCTTTGAAGAGAAGGGCTTCTTGCCTAAGCACTAA 963 0.4258 MGEKKRVCVTGAGGYVASWVVKLLLSKGFIVHGTVRYPYDERNSHLKKLEKASENLKLFKADLMDFQGLFAATDGCTGVFHIASPVPSAKVSNPQLEVVEPAVIGTRNIIKACEMAKVKKLVVVSSLAAVVLNPKWPKDRPKDEECWSDPEFCKTIEYPYFLSKTLAESEALEYAKTSEFNIVTVCPSLVLGPMLQSTLNATSAFLLSYLKDGHESVENKDRPVIDARDLAEAILLVYEKPEAHGRYICSSYTISTQELVEKLKSMYPNYSYPKSYIEGEEHLKLSSQKLQSLGWKYRPLEETLVDAVKSFEEKGFLPKH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0027 320 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 308 - -
Vvi12g0027 320 Gene3D - 1 320 - -
Vvi12g0027 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 312 IPR036291 -
Vvi12g0027 320 Pfam NAD dependent epimerase/dehydratase family 7 243 IPR001509 -
Vvi12g0027 320 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 318 - -
Vvi12g0027 320 CDD FR_SDR_e 7 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0027 Vvi-Chr12 443609 459784 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0027 4 313 Monolignol Biosynthesis Gene Families AT2G33590 58.842 1.53e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0027 - - vvi:100262473 623.624