Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0022 ATGGGAAGAGGGAAGATCGAAATTAAGCGGATCGAGAACACCACTAATCGACAAGTCACCTTCTGTAAGCGCCGCAACGGCTTGCTCAAAAAGGCCTATGAATTATCGGTCTTATGTGATGCAGAAGTTGCTCTCATCGTCTTCTCCAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAGAACGACAATCGAAAGGTACAAAAAAGTGTGTTCTGATTCCTCCAATACCGGATCTGTTTCTGAAGCTAATGCTCAGTTTTACCAGCAAGAAGCCTCCAAATTGCGCCGTCAAATCAGGGATATACAGAATTTGAACAGGCATATTCTGGGTGAGGCTCTTAGCTCTCTGAACTTTAAGGAACTCAAGAATCTGGAGACCAGGTTGGAGAAAGGTATCAGCAGAATCAGATCCAAAAAGAATGAATTGCTGTTTGCTGAAATCGAGTATATGCAAAAGAGGGAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCTCAGTACGAGAGCGTGCCGCAGCAGCCATACGACTCTCAAAACTTGCTCCCTGTTAACCTCCTGGACCCTAATCACCATTACTCTCGCCACGACCAAACAGCTCTCCAACTAGTGACTATTTGTCTACTTTATTTATATCTAAAAACTTATTTTTCCTCAATCTTAAAAATTAATAAATTAATGAAATATCATTTTATTGTTGCTTTATCTTATAATGGATTAGTGAGAAGTGGTGCTGTATTTGTGGGTCTCTTCGTGGAGTAG 825 0.423 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQMNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRHDQTALQLVTICLLYLYLKTYFSSILKINKLMKYHFIVALSYNGLVRSGAVFVGLFVE* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0022 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi12g0022 274 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Vvi12g0022 274 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vvi12g0022 274 Coils Coil 124 144 - -
Vvi12g0022 274 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi12g0022 274 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi12g0022 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Vvi12g0022 274 Coils Coil 87 107 - -
Vvi12g0022 274 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Vvi12g0022 274 Coils Coil 155 175 - -
Vvi12g0022 274 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0022 Vvi-Chr12 279688 291361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0022 1 225 MADS-box Gene Family AT3G58780 72.961 2.97e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi12g0022 K-box 4.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0022 K09264 - vvi:100232864 441.81