Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0015 ATGTTGGTTGAGATAGTGAGAAAGAAGAGGCAAGAGAAGAAGAAAAGGGTAGAGGAAGGTGAGGAGGGAGGGATTTTACTATCAAGGTTAGTGGCTGGACTGATTCGAGGGGAGATCAAGGAGGAGGTTGTGGATAATGTGGTATTGCTAGTATTTGCAGCTCATGACACAATTTCATTCACTATTGCCATGACATTTAGAATGTTGGCTCACCACCCAACCTGCTATGCTCTCCTCTATCAAAACATGCTAAAGGCAATTGTCGACATTGAATATGAAGGATACACCATTCCCAGAGGATGGAAGGTTCTATGGACAGCCTATGGAACGCATTACAATCCCAAGTATTTCGGAGATCCTTCCACTTTTGATCCAAGCAGATTTGAAGACGCCGTGCCACCATATGTTTTTGTTCCATTTGAGGGAGGACCAAGGGTGTGTGCAGGGTACCAACTTGCTAAGCTAAATATCCTCATCTTCCTGCATTTCGTTGTCACTCACTATGATTGGTCCTTACGCTATCTTGATGAACCAATCACCATGGATCCCCTCCCATTCCCTTTCCAAGAAATGCCCATCAAAATTTCTCCTAAGCCAATAATATAA 606 0.4356 MLVEIVRKKRQEKKKRVEEGEEGGILLSRLVAGLIRGEIKEEVVDNVVLLVFAAHDTISFTIAMTFRMLAHHPTCYALLYQNMLKAIVDIEYEGYTIPRGWKVLWTAYGTHYNPKYFGDPSTFDPSRFEDAVPPYVFVPFEGGPRVCAGYQLAKLNILIFLHFVVTHYDWSLRYLDEPITMDPLPFPFQEMPIKISPKPII* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0015 201 Pfam Cytochrome P450 40 87 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 Pfam Cytochrome P450 86 193 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 FunFam Uncharacterized protein 86 186 - -
Vvi12g0015 201 Gene3D Cytochrome P450 1 85 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 PANTHER CYTOCHROME P450 26 2 79 - -
Vvi12g0015 201 PRINTS E-class P450 group I signature 42 59 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 PRINTS E-class P450 group I signature 147 170 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 PRINTS E-class P450 group I signature 106 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 PRINTS E-class P450 group I signature 137 147 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 SUPERFAMILY Cytochrome P450 3 192 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0015 201 Gene3D Cytochrome P450 86 186 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0015 Vvi-Chr12 192829 193719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0015 1 192 Cytochrome P450 AT3G19270 29.787 3.48e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0015 - - vvi:100247213 358.221