Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0012 ATGAATCATTTTGAAATAATTAAAAAGAGCGCCTCTCTTTTCTCTTCAATGGCTTCTCCGCCAGCAGTAGCAGCAGAGACGATCGAGAAAGCCACAACAGCGCTTCTCAAGTGGCAAGCTTCGAAATCAAATGGCCAAAAGCCCCAACTCCTGAATCAAGACGAAGATCGATTCATCTACCTCATCCTCACCCTCAAGAAAATACCACCAAAAGGCCGCACAAACCCCCACAAAATCCCACTTCCGCATCCACTTCACACCCCCCCAAATTCCGAGCTGTGCCTCATCGTCGACGACAGACCAAACTCCCATCTCACCTCCCAAGCAGCAAAAACCAAAGTGAAATCTGAAAACATACCTGTTTCGAAGGTTCTGAGTCTCTCCAAGCTTAAGTCCAACTTCAGGCCTTTTGAGGCCAAGCGGAAGCTCTGTGATTCCTATGATTTCTTTTTGGCGGATAAACGGATTGTGCCTTTGCTCCCCAAGCTGTTGGGGAAGCATTTTTTCAAGAAGAGAAAGATTCCGGTGGCGGTGGATTTGGGTCACAAGAACTGGAAGGAGCAGATTGACAGGGCTTGCGGGTCGGCTTTGTTATATTTGAGGACCGGGACTTGTAGTGTAGTGAGGGTGGGGAAGCTGTCTATGGAGAAGGAGCAAATTGTGGAGAATGTGGTTGCCGCCATTGATGGGGTTGTTGAGTTGGTGCCAAAGAAGTTGGCTGGGGTTCGGTCGCTGCATTTGAAGTTGTTGGAGTCTCTGGCTTTGCCTGTTTATCAGGCGGTGCCAGATATGAGATTGAAAATTGAAGGAGTTTTGGAGAAGGAGAGCGAGGAGGTGAAGGAGGAAGAGGAGAGTGGGAGAGTTGAGAAAGGAGAAAAGAAGAAGGTGGGAAAGAAAGGGAGGATTCATGAGGTTCGCTACATGGATGGTGATGTTGGTGGACTGTTGGAAGAGGATGAGTTGGACGGTGATGGGGACGAAGATGATGATGAGGGTGACAAGAGTGCAGATGATGAGTTGGGTGGTGGTGAAATTGTCGGTAAGAAGAGAAAGAAAGAAAAAACCAAGAAAGAACAGGCCCTTAGCGATTTAAATGGTGAGAAACCATTGAAGAAATCAAAAAAGGTGAAGAAGGAAGATGAGGAGAAACAAAAGAAAAAGAAAGATAGGTTGAATGTGAAATCTGGAGAAAAATCTGGTGGAAATAAGAAGAAGGATAGAAAGGTCACTTATTTTGTATTTCAGTTATGGAAGAACTAA 1260 0.4587 MNHFEIIKKSASLFSSMASPPAVAAETIEKATTALLKWQASKSNGQKPQLLNQDEDRFIYLILTLKKIPPKGRTNPHKIPLPHPLHTPPNSELCLIVDDRPNSHLTSQAAKTKVKSENIPVSKVLSLSKLKSNFRPFEAKRKLCDSYDFFLADKRIVPLLPKLLGKHFFKKRKIPVAVDLGHKNWKEQIDRACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHLKLLESLALPVYQAVPDMRLKIEGVLEKESEEVKEEEESGRVEKGEKKKVGKKGRIHEVRYMDGDVGGLLEEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKEKTKKEQALSDLNGEKPLKKSKKVKKEDEEKQKKKKDRLNVKSGEKSGGNKKKDRKVTYFVFQLWKN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0012 419 Gene3D - 89 194 IPR016095 -
Vvi12g0012 419 MobiDBLite consensus disorder prediction 314 337 - -
Vvi12g0012 419 CDD Ribosomal_L1 28 257 IPR028364 -
Vvi12g0012 419 MobiDBLite consensus disorder prediction 338 405 - -
Vvi12g0012 419 FunFam Ribosomal protein L1p/L10e family 103 194 - -
Vvi12g0012 419 Pfam Ribosomal protein L1p/L10e family 52 252 IPR028364 -
Vvi12g0012 419 MobiDBLite consensus disorder prediction 313 405 - -
Vvi12g0012 419 SUPERFAMILY Ribosomal protein L1 53 258 IPR023674 -
Vvi12g0012 419 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 30 252 - -
Vvi12g0012 419 MobiDBLite consensus disorder prediction 275 295 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0012 146 248 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 32.039 4.34e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0012 K14775 - vvi:100264299 581.252