Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0007 ATGCTCTCAGATCAGCCAAAAAAGAATTCTGCAGAGATGGACTTCTTCTCTGAGTATGGTGATGCCAATAGATACAAGATTCAGGAAGTTGTTGGAAAAGGAAGTTATGGTGTTGTTTGTTCAGCAGTTGATACTCTTACTGGTGAAAAAGTGGCAATAAAGAAAATACATGATATCTTTGAACATATCTCTGATGCTGCTCGAATTCTCCGTGAGATAAAGCTGCTCAGGCTTCTACGGCATCCCGATATTGTTGAAATTAAACACATTATGCTACCACCTTCAAGAAGAGACTTTAAAGATATTTACGTCGTTTTTGAACTTATGGAGTCGGATCTACACCAAGTCATCAAAGCTAATGATGATTTGACGAGAGAGCACTATCAATTTTTTCTTTACCAATTGCTACGGGCATTGAAGTACATTCACACAGCAAATGTCTATCACCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGTAAACTCAAAATATGTGATTTTGGGTTAGCAAGAGTTGCATTCAGTGATACACCTACAACAATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCTCCAGAGTTATGTGGATCATTTTTCTCCAAGTATACACCTGCGATTGATATATGGAGTATAGGCTGCATTTTTGCTGAGGTATTAACAGGGAAGCCATTATTTCCTGGAAAAAATGTTGTGCACCAGCTGGATTTGATGACTGATCTGCTTGGGACACCATCTTTAGATACCATTTCTCGGGTTCGAAATGAGAAGGCAAGGCGATACCTTACTAGCATGAGGAAGAAGCAGCCTGTAATATTTGCACAGAAGTTTCCAAATGCTGATCCTTTGGCACTACGGCTATTGGAAAGGCTTCTTGCTTTTGATCCAAAGGATCGGCCAACTGCTGAAGAGGCATTGGCTGATCCCTACTTTAAGGGTCTGGCAAAGGTTGAGAGGGAACCTTCTTGCCAACCAATTACAAAGATGGAATTTGAGTTTGAGAGGAGAAGGGTTACAAAGGAGGACATACGGGAGCTAATTTTCCGGGAGATACTAGAATACCATCCTCAACTACTCAAAGACTACGTGAATGGAACTGAAAGGACTAATTTTCTCTATCCAAGTGCTGTTGATCAATTCAGAAAGCAATTTGCACATCTAGAGGAAAACAGTGGTAAAACTGGGCCAGTAATTCCACTTGAGAGAAAGCATGTGTCACTTCCCAGGTCTACTGTTGTACATTCAAATACAATCCCTGCAAAAGAACCACATATCATAGCCTTCAAGGATCGTCAAATTGCAGAAGAGTCATGCAGTAGGAGTTCTAGAGACACAGATGGAATTCCTGGAAATCTGTCAAGGAGCTTGCAGGCATCCCAACGGATCCCAATGGCCAAACCAGGAAAGGTTGTGGGGCCATTGGCACCACCCGAGAATGGAAGTGCCATTAAAGATGCATATGATCACAGGACATTAATCAGAAATGCAGTCCTTCCTTCCCAGGCTCTTCCTCCTGCGTATTGTTATCGCAGAACTAGTGCAGGAAAGCAAGAAAGATGTGTGGGAGAAGCAGAGAGGGACTTATCATCACAAGCAAAACAAGTCCCTCAATGTGGCATGACAGCCAAGTTAGCCCCAGACATAGCCATCAATATTGACACCAATCCATTCTATATGACAAGGGCGGGAGTGACCAAGGTGGACCATGTTGATGACCGAATTACTATTGATGCAAACTTGCTGCAAGCCAAAGCTCAGTTCGGTGGGATTGGTGCTGCTGCTGCAGCGGCTGCAACAGCGGCTGCTCACAGAAAAGTTGGGACAGTTCAGTTTGGTATGTCAAGAATGTATTAG 1869 0.4243 MLSDQPKKNSAEMDFFSEYGDANRYKIQEVVGKGSYGVVCSAVDTLTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVIFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRKQFAHLEENSGKTGPVIPLERKHVSLPRSTVVHSNTIPAKEPHIIAFKDRQIAEESCSRSSRDTDGIPGNLSRSLQASQRIPMAKPGKVVGPLAPPENGSAIKDAYDHRTLIRNAVLPSQALPPAYCYRRTSAGKQERCVGEAERDLSSQAKQVPQCGMTAKLAPDIAINIDTNPFYMTRAGVTKVDHVDDRITIDANLLQAKAQFGGIGAAAAAAATAAAHRKVGTVQFGMSRMY* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0007 622 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vvi12g0007 622 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 347 - -
Vvi12g0007 622 FunFam Mitogen-activated protein kinase 111 339 - -
Vvi12g0007 622 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vvi12g0007 622 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vvi12g0007 622 FunFam Mitogen-activated protein kinase 15 118 - -
Vvi12g0007 622 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0007 622 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vvi12g0007 622 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0007 622 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi12g0007 622 CDD STKc_TDY_MAPK 24 361 - -
Vvi12g0007 622 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0007 Vvi-Chr12 124901 132728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0007 1 466 MAP Kinase Gene Family AT2G42880 84.582 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi12g0007 Pkinase 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0007 - - vri:117926696 1192.95