Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0006 ATGCAAAGGGTTCAATTTCAGATTCCATCTCTAAATGTTCCTAAGAAAATAGGAAGTGGTGCATGGGGGATCCCACATGGAACTGATGCTTATCATACATCAAGTGATGTTAGCTTGTTTTCAAGCTCGTTACCTGTTCTGCCACATGAAAAGTTGCACTTTAATGATTCAGAGCATTGTGGTCACTCTGTTGATGATGGCTCACCTAGCTTGAATAAACTTCAGCAAGATGAAGAAAGTAAGGATCCACTTGAAGATGTTGATCTGAATGCAATTGGAAGCTTGCTTCCTGATGATGAGGATGAGCTTTTAGCTGGCATCATGGACGATTTTGATCTTAGTGGGTTGCCTACCCAAGTGGAAGATTTGGAAGATGATCTCTTTGGCAGTGGAGGAGGAATGGAGTTGGATTTTGATATTGGTATTTCAAAGTTAAGCCTATCTGATGGTGTTGCTGGAAATGGGATTGGACATTATGGCCTTCCAAATGGTGTGGCGACAGTTGCTGGGGAGCATCCATATGGGGAGCATCCTTCAAGGACATTATTTGTTAGGAATATCAATAGCAATGTTGAGGACTCAGAGCTGAAAACTCTCTTTGAGCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTGCACTGCAGAATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGGATAACCCATCAGAGAAGGACATTAACCAAGGGACTCTTGTTGTGTTTAATTTGGATGCATCGGTATCAAATGATGACCTTCGTCAAATATTCGGTGCTTATGGAGAGGTCAAAGAGATCAGGGAAACACCACACAAGCGACACCATAAGTTCATTGAATTTTATGATGTTAGAGCTGCAGAGGCTGCTCTCAGAGCATTAAATAGGAGTGACATAGCTGGAAAACGCATAAAGCTAGAACCTAGTCGCCCTGGTGGGGCACGTCGGAACTTGATGCAGCAACTGAGCCAAGAGCTGGAACAAGATGAAGCTCGAAGTTTTCGACATCATGTAGGTTCACCAGTTACCAACTCTCCTCCAGGTAACTGGGCAGCATTCAGCCCAGTTGAACATAATCCTTTGCAAGCTTATAGTCATTCCCCTGGTTTGGGAAATATCAGCCCTATAAACAGCAACCATTTGCCTGGGTTAGCTTCAATTCTTCCCCCTCATATATCAAACTCTGTGAAGATTGCACCTATTGGTAAAGACCAAGGAAGGGTTAACCATGTGAATCAGGTGTTTACTAATGCGAAACCAACACAAGGAGCAGCCTATCAGATTTCTCATTCTGTTCCTGAGCAAAAATTAAGTGCTAGCCCTGGACCCATTTCTTCTCTTGGTGAATCAAATTCTAATTCATCTGGTATTGGGACATTGTCTGGCCCTCAGTTTCTCTGGGGAAGCCCCACTCCTTACTCTGAGCGCCCCAATTCTTCTGCCTGGCCAACATCATCTGTGGGGCACCCATTTGTGTCCAGTGGACAAGGACAAGGTTTTCCCTATTCTAATCAGCATGGTTCTTTCCTTGGTTCCCATCAACACCATCATGTGGGATCTGCTCCATCTGGTGTTCCTCTTGATAGGCATTTTGGCTACTTCCCTGAGTCACCAGAAACATCCTTCATGAGCCCTGTTACATTTGGGGGCATGGGCTTAAGTCGCAGCAATGGAAATTTTGCAATGAATGTGGGTGCTCGGGCAGCTATTAACACTGGTGTTGCTCTTCCAGGAAACATGACCGAAAATGGTTTGCCTAGTTTCAGAATGTTATCATTACCGAGGCATGGTCCTCCATTCCTTGGGAATGGTACTTATCCAGTATCAGGAGTGACCAGCAATGAGGTATTGGCTGAACGTGGTCGAACTCGTCGAGTTGAGAACAGTGGGAATCAGATAGACAGCAAGAAGCAGTATCAGCTTGATTTGGATAAAATCATTAGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAAGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTACCTATGATTTTCTATACTTGCCAATTGATTTTAAGAATAAATGTAATGTGGGTTATGCCTTTATCAACATGGTGTCTCCTTCGCACATTATCCCCTTTTATGAGGCATTTAATGGAAAGAAGTGGGAAAAGTTCAACAGTGAAAAAGTTGCTTCATTGGCATATGCGCGAATACAAGGCAAGGCAGCCCTTGTTACACACTTCCAGAATTCAAGCCTTATGAATGAAGATAAGCGATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGTCTTACTCTGGGGATTCATTGGAGAGCCCAAAGGGTAATTTGGAAGATTAG 2508 0.4354 MQRVQFQIPSLNVPKKIGSGAWGIPHGTDAYHTSSDVSLFSSSLPVLPHEKLHFNDSEHCGHSVDDGSPSLNKLQQDEESKDPLEDVDLNAIGSLLPDDEDELLAGIMDDFDLSGLPTQVEDLEDDLFGSGGGMELDFDIGISKLSLSDGVAGNGIGHYGLPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELKTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARSFRHHVGSPVTNSPPGNWAAFSPVEHNPLQAYSHSPGLGNISPINSNHLPGLASILPPHISNSVKIAPIGKDQGRVNHVNQVFTNAKPTQGAAYQISHSVPEQKLSASPGPISSLGESNSNSSGIGTLSGPQFLWGSPTPYSERPNSSAWPTSSVGHPFVSSGQGQGFPYSNQHGSFLGSHQHHHVGSAPSGVPLDRHFGYFPESPETSFMSPVTFGGMGLSRSNGNFAMNVGARAAINTGVALPGNMTENGLPSFRMLSLPRHGPPFLGNGTYPVSGVTSNEVLAERGRTRRVENSGNQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVDQEPFASGNLNICIRQPDGSYSGDSLESPKGNLED* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0006 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 246 IPR000504 GO:0003723
Vvi12g0006 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 332 IPR000504 GO:0003723
Vvi12g0006 835 SUPERFAMILY RNA-binding domain, RBD 682 767 IPR035979 GO:0003676
Vvi12g0006 835 CDD RRM1_MEI2_like 179 255 IPR034453 -
Vvi12g0006 835 Gene3D - 168 263 IPR012677 -
Vvi12g0006 835 SUPERFAMILY RNA-binding domain, RBD 177 340 IPR035979 GO:0003676
Vvi12g0006 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
Vvi12g0006 835 SMART rrm1_1 181 249 IPR000504 GO:0003723
Vvi12g0006 835 SMART rrm1_1 682 758 IPR000504 GO:0003723
Vvi12g0006 835 SMART rrm1_1 266 334 IPR000504 GO:0003723
Vvi12g0006 835 Pfam RNA recognition motif 2 680 776 IPR007201 -
Vvi12g0006 835 MobiDBLite consensus disorder prediction 350 377 - -
Vvi12g0006 835 MobiDBLite consensus disorder prediction 459 538 - -
Vvi12g0006 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 253 IPR000504 GO:0003723
Vvi12g0006 835 MobiDBLite consensus disorder prediction 459 548 - -
Vvi12g0006 835 Gene3D - 264 363 IPR012677 -
Vvi12g0006 835 FunFam Protein MEI2-like 1 264 359 - -
Vvi12g0006 835 CDD RRM3_MEI2_like 683 768 IPR034454 -
Vvi12g0006 835 FunFam MEI2-like protein 5 isoform 2 169 263 - -
Vvi12g0006 835 PANTHER RNA RECOGNITION MOTIF-CONTAINING 38 798 - -
Vvi12g0006 835 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0006 Vvi-Chr12 87943 97690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0006 175 407 Eukaryotic Initiation Factors Gene Family AT3G16380 24.803 1.35e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0006 - - vvi:100245436 1669.06