Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1236 ATGGGATCATCTCTGAGTTGCTGTGGTGCAGAGAAGGTTGATGAAGGGGTAACATTAGTCGGAGTTAACAGTCCATGGAGGATATTCTCCTATAAGGAGTTGTATACAGCTACTAATGGTTTTAGTGAGGAGAACAAGCTTGGAGAAGGAGGTTTTGGAAGTGTGTACTGGGGAAAAACTACTGATGGCCTTCAGATAGCTGTCAAAAAGTTAAAAGCCATGAACTCAAAGGCTGAGATGGAATTCGCAGTAGAAGTTGAAGTTCTCGGACGGGTTCGGCACAAAAATTTGTTGGGTCTTCGGGGTTATTGTGTGGGGACTGATCAGCGCCTCATAGTCTATGATTACATGCCCAATCTAAGCTTGCTTTCTTATCTCCATGGTCAATTTTCGAGTCAAGTCCAGCTAGACTGGAGAAGGAGAATGAAAATCATTATCGGCTCTGCTGAAGGCCTACTGTACTTGCATCATGAGGTGACACCCCACATCATTCATAGAGATATAAAGGCTAGTAATGTGCTTCTGGATTCAGATTTTGAACCACTGGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGTGTTAGCCACATGACAACCCGTGTTAAGGGCACTTTGGGATACCTAGCACCAGAATATGCCATGTGGGGGAAGGTTTCAGAGAGTTGTGATGTATACAGTTTCGGAATTCTTCTATTAGAGATTCTCACTGGAAAAAAACCAATAGAAAAGCTCCCTGGAGGAGTTAAGAGGACGATAACTGAATGGGCTGAACCCCTGATAATCAAAGGGAGGTTTAAGGATCTTGTGGATCCAAGGCTTCGAGGGAACTTCGATGAAAACCAACTGAGACAGGCCATCAATGTTGCTGCCTTATGTGTGCAAAATGAATGTGAGAAGCGGCCTAACATGAAGGAAGTGGTTAGCCTTCTAAAAGGTTATCAGCCCAAAGACAAAGTGACCCAAATGAGAATGGAAAGCGTAAAATATGGGGAAGAATTATTGGCACTTGACCAAGGTAGTGGTGATGATGATGATGATGATGATAATGATCCTGATGAAAGCAAAGGGTATGGCGTTTTTGGTGCCATGGAAGTGCAGAAGATGCCAGAACCTCGCATTCGCCGTGGAGACAGAAGAATTATGTAA 1152 0.4375 MGSSLSCCGAEKVDEGVTLVGVNSPWRIFSYKELYTATNGFSEENKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSYLHGQFSSQVQLDWRRRMKIIIGSAEGLLYLHHEVTPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEILTGKKPIEKLPGGVKRTITEWAEPLIIKGRFKDLVDPRLRGNFDENQLRQAINVAALCVQNECEKRPNMKEVVSLLKGYQPKDKVTQMRMESVKYGEELLALDQGSGDDDDDDDNDPDESKGYGVFGAMEVQKMPEPRIRRGDRRIM* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1236 383 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Vvi11g1236 383 MobiDBLite consensus disorder prediction 339 354 - -
Vvi11g1236 383 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 320 - -
Vvi11g1236 383 Pfam Protein tyrosine and serine/threonine kinase 44 312 IPR001245 GO:0004672|GO:0006468
Vvi11g1236 383 Gene3D Transferase(Phosphotransferase) domain 1 117 334 - -
Vvi11g1236 383 Gene3D Phosphorylase Kinase; domain 1 17 116 - -
Vvi11g1236 383 MobiDBLite consensus disorder prediction 338 383 - -
Vvi11g1236 383 CDD STKc_IRAK 47 314 - -
Vvi11g1236 383 SUPERFAMILY Protein kinase-like (PK-like) 23 320 IPR011009 -
Vvi11g1236 383 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 116 - -
Vvi11g1236 383 SMART serkin_6 41 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1236 383 ProSiteProfiles Protein kinase domain profile. 41 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1236 383 FunFam PTI1-like tyrosine-protein kinase At3g15890 117 329 - -
Vvi11g1236 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1236 Vvi-Chr11 19634470 19636639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1236 29 312 Trihelix Transcription Factor Family AT1G70460 48.958 1.30e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vvi11g1236 PK_Tyr_Ser-Thr 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1236 - - vvi:100256439 766.148