Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1235 ATGAATTTGCTGTTTTCTGTTATATATATATACATATGTCCTAATATGTTCCTTCAAGTAGAATTTCGCCAAATAAGTTCAAGAAGGTCGAACAAAGAGGTTGTCTCCGCCGTCCAAAAGCTTGTTACCTCAAAATCAAAGAGAGAAAAGTCTACACGAAAAGCAGTACTAGATGGGTCTGAAGGAGAATCCCACACCACAGAAGATAGCTTTAGTTTTGGGGATTCAAGCATCACAGAGTCCCCTCCTCTAGCTTCCAAGCTTAAAGGCCAATCCAACTTTAGGAAGCAATTATCACCAATTAAGATCATCTCCTCCTTTCTCCTCTCACCCTTTAATTTAAGTGGAAGAAAAAGGAATGAACGTTTATCTGATAAAGAAAAGCACCAACCTTTGTTGAGGTGCTTCAGCTATGAGGAGATTTCAAAAGCAACAAACAACTTCCACCCAGATAATATGGTGGGACAAGGGGGGTATTCAGAAGTATACAGAGGCCACCTTGATAATGGACAGATAGTAGCAGTGAAGAGGTTAGCTAAAGACAACGCGGATGAAAACAAAGAGAAAGAGTTCCTTATTGAATTAGGCATAATAGGACATGTTTGCCATCCTAATACTGCAAACTTGGTTGGCTGCTGTATTGAAAATGGACTCCATTTGATCTTTAACTTCTCTCCAAATGGAACTCTGTCATCTGCATTGCATGGTAAAACAGGCAAACCTTTAGAATGGCCGGACAGATACAAGATTGTCACCGGAGTTGCAAGGGGTCTGCATTATCTTCATAAATGTTGCAAGCATCGAATAATACATCGCGACATAAAAGCCTCTAATGTCCTTCTTGGGTCAGATTTCGAGCCACAGATTTCGGACTTCGGGCTTGCAAAATGGCTTCCTAACAAATGGACTCACCACTCTGTGATTCCCATTGAGGGTACATTTGGATACCTGGCCCCAGAGTACTTCATGCATGGAATTGTAGATGAAAAGACTGATGTTTTTGCATTTGGGGTTCTGCTTTTGGAGATCATAACTGGCCGAAGGCCTGTGGACTCATCAAAACAAAACCTTCTCCTATGGGCAAAGCCTCTTATGGAGTCTGGAGACATTTATGAACTAGCAGATCCTAAATTGGGAGGTAAATATGATGTGGAACAAATGTACAGACTAGTCCTCACAGCTTCCTATTGCGTAAGACAAACCTCAATATGGCGTCCATCAATGAGCGAGGTGCTGGCGCTTCTAACAGATGGTGGTGACTCTGCTGTTGCAAGGAGATGGAGGGTGCCAAAATATACAAGTGATGAGATGGATGAATACTCCATGGTTTTTGGTTCTGATGTTCCAACAGATATAGTTTTGGATGATGATTACTGA 1377 0.4161 MNLLFSVIYIYICPNMFLQVEFRQISSRRSNKEVVSAVQKLVTSKSKREKSTRKAVLDGSEGESHTTEDSFSFGDSSITESPPLASKLKGQSNFRKQLSPIKIISSFLLSPFNLSGRKRNERLSDKEKHQPLLRCFSYEEISKATNNFHPDNMVGQGGYSEVYRGHLDNGQIVAVKRLAKDNADENKEKEFLIELGIIGHVCHPNTANLVGCCIENGLHLIFNFSPNGTLSSALHGKTGKPLEWPDRYKIVTGVARGLHYLHKCCKHRIIHRDIKASNVLLGSDFEPQISDFGLAKWLPNKWTHHSVIPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIITGRRPVDSSKQNLLLWAKPLMESGDIYELADPKLGGKYDVEQMYRLVLTASYCVRQTSIWRPSMSEVLALLTDGGDSAVARRWRVPKYTSDEMDEYSMVFGSDVPTDIVLDDDY* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1235 458 PANTHER OS08G0249100 PROTEIN 27 428 IPR046958 -
Vvi11g1235 458 SMART serkin_6 148 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1235 458 SUPERFAMILY Protein kinase-like (PK-like) 126 415 IPR011009 -
Vvi11g1235 458 Pfam Protein tyrosine and serine/threonine kinase 152 359 IPR001245 GO:0004672|GO:0006468
Vvi11g1235 458 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 225 429 - -
Vvi11g1235 458 MobiDBLite consensus disorder prediction 49 84 - -
Vvi11g1235 458 ProSitePatterns Protein kinases ATP-binding region signature. 154 176 IPR017441 GO:0005524
Vvi11g1235 458 Gene3D Transferase(Phosphotransferase) domain 1 226 426 - -
Vvi11g1235 458 Gene3D Phosphorylase Kinase; domain 1 111 224 - -
Vvi11g1235 458 FunFam Putative receptor-like serine/threonine-protein kinase 115 224 - -
Vvi11g1235 458 MobiDBLite consensus disorder prediction 49 65 - -
Vvi11g1235 458 ProSiteProfiles Protein kinase domain profile. 148 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1235 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Vvi11g1235 458 MobiDBLite consensus disorder prediction 66 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1235 Vvi-Chr11 19627840 19629929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1235 136 451 Trihelix Transcription Factor Family AT1G70460 41.791 1.47e-75 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi11g1235 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1235 - - vvi:100261525 886.33