LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g1235	ATGAATTTGCTGTTTTCTGTTATATATATATACATATGTCCTAATATGTTCCTTCAAGTAGAATTTCGCCAAATAAGTTCAAGAAGGTCGAACAAAGAGGTTGTCTCCGCCGTCCAAAAGCTTGTTACCTCAAAATCAAAGAGAGAAAAGTCTACACGAAAAGCAGTACTAGATGGGTCTGAAGGAGAATCCCACACCACAGAAGATAGCTTTAGTTTTGGGGATTCAAGCATCACAGAGTCCCCTCCTCTAGCTTCCAAGCTTAAAGGCCAATCCAACTTTAGGAAGCAATTATCACCAATTAAGATCATCTCCTCCTTTCTCCTCTCACCCTTTAATTTAAGTGGAAGAAAAAGGAATGAACGTTTATCTGATAAAGAAAAGCACCAACCTTTGTTGAGGTGCTTCAGCTATGAGGAGATTTCAAAAGCAACAAACAACTTCCACCCAGATAATATGGTGGGACAAGGGGGGTATTCAGAAGTATACAGAGGCCACCTTGATAATGGACAGATAGTAGCAGTGAAGAGGTTAGCTAAAGACAACGCGGATGAAAACAAAGAGAAAGAGTTCCTTATTGAATTAGGCATAATAGGACATGTTTGCCATCCTAATACTGCAAACTTGGTTGGCTGCTGTATTGAAAATGGACTCCATTTGATCTTTAACTTCTCTCCAAATGGAACTCTGTCATCTGCATTGCATGGTAAAACAGGCAAACCTTTAGAATGGCCGGACAGATACAAGATTGTCACCGGAGTTGCAAGGGGTCTGCATTATCTTCATAAATGTTGCAAGCATCGAATAATACATCGCGACATAAAAGCCTCTAATGTCCTTCTTGGGTCAGATTTCGAGCCACAGATTTCGGACTTCGGGCTTGCAAAATGGCTTCCTAACAAATGGACTCACCACTCTGTGATTCCCATTGAGGGTACATTTGGATACCTGGCCCCAGAGTACTTCATGCATGGAATTGTAGATGAAAAGACTGATGTTTTTGCATTTGGGGTTCTGCTTTTGGAGATCATAACTGGCCGAAGGCCTGTGGACTCATCAAAACAAAACCTTCTCCTATGGGCAAAGCCTCTTATGGAGTCTGGAGACATTTATGAACTAGCAGATCCTAAATTGGGAGGTAAATATGATGTGGAACAAATGTACAGACTAGTCCTCACAGCTTCCTATTGCGTAAGACAAACCTCAATATGGCGTCCATCAATGAGCGAGGTGCTGGCGCTTCTAACAGATGGTGGTGACTCTGCTGTTGCAAGGAGATGGAGGGTGCCAAAATATACAAGTGATGAGATGGATGAATACTCCATGGTTTTTGGTTCTGATGTTCCAACAGATATAGTTTTGGATGATGATTACTGA	1377	0.4161	MNLLFSVIYIYICPNMFLQVEFRQISSRRSNKEVVSAVQKLVTSKSKREKSTRKAVLDGSEGESHTTEDSFSFGDSSITESPPLASKLKGQSNFRKQLSPIKIISSFLLSPFNLSGRKRNERLSDKEKHQPLLRCFSYEEISKATNNFHPDNMVGQGGYSEVYRGHLDNGQIVAVKRLAKDNADENKEKEFLIELGIIGHVCHPNTANLVGCCIENGLHLIFNFSPNGTLSSALHGKTGKPLEWPDRYKIVTGVARGLHYLHKCCKHRIIHRDIKASNVLLGSDFEPQISDFGLAKWLPNKWTHHSVIPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIITGRRPVDSSKQNLLLWAKPLMESGDIYELADPKLGGKYDVEQMYRLVLTASYCVRQTSIWRPSMSEVLALLTDGGDSAVARRWRVPKYTSDEMDEYSMVFGSDVPTDIVLDDDY*	459

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi11g1235	458	PANTHER	OS08G0249100 PROTEIN	27	428	IPR046958	-
Vvi11g1235	458	SMART	serkin_6	148	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi11g1235	458	SUPERFAMILY	Protein kinase-like (PK-like)	126	415	IPR011009	-
Vvi11g1235	458	Pfam	Protein tyrosine and serine/threonine kinase	152	359	IPR001245	GO:0004672\|GO:0006468
Vvi11g1235	458	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	225	429	-	-
Vvi11g1235	458	MobiDBLite	consensus disorder prediction	49	84	-	-
Vvi11g1235	458	ProSitePatterns	Protein kinases ATP-binding region signature.	154	176	IPR017441	GO:0005524
Vvi11g1235	458	Gene3D	Transferase(Phosphotransferase) domain 1	226	426	-	-
Vvi11g1235	458	Gene3D	Phosphorylase Kinase; domain 1	111	224	-	-
Vvi11g1235	458	FunFam	Putative receptor-like serine/threonine-protein kinase	115	224	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g1235	Vvi-Chr11	19627840	19629929	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g1235	136	451	Trihelix Transcription Factor Family	AT1G70460	41.791	1.47e-75	248

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Vvi11g1235		PK_Tyr_Ser-Thr	1e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g1235	-		-	vvi:100261525	886.33

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