Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1234 ATGGGATTCCAGGAACTTAACGGCAAGACTTTCTCGGCGGCGACTTGGGCCTTGGCTGCCAAGCCATGCGACTCCTGCAAGTCCGCTGCCGCCCTACTTTTCTGTCGAGCGGATTCCGCCTTTCTTTGCGTGGGTTGTGACTCCAAGATCCACGGTGCCAACAAGCTGGCGTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCTCCTGCCAGCGTCACCTGTAAGGCCGACGCCGCCGCCCTATGCGTCACGTGCGACCGCGACATCCACTCCGCGAACCCCCTCGCTCGTCGCCACGACCGAGTCCCGGTGGTTCCGTTCTACGACTCGGCCGAGTCCTTGGTGAAGTCTACCGCCGCTGCTGTTGGGTTTCTCGTCCCCGGCGGCGCCGGGGATGAGGAGGACTCCGAGGCTGCTTCATGGCTCCTCCCGAACCCGAAACTCCCCGAAGGACCGGAGGTGAAGTCCGGCGAGGTGTTCTTCTCCGATATCGATCCATTTCTGGATTTTGATTACCCGGATGCGAAATTCCCACACCATCATCACCACCACTGCGGTGGAAATGATGGTGTAGTTCCGGTTCAAGCCAAAGATCCCTCACCTCCGGTCACGAACCACCCTGCTGACAATTGTTTTGAACTGGATTTCTCTCGATCAAAGCTCTCTGCCTACAACTATACAGCTCAATCTCTAAGCCAAAGCATTTCATCTTCAGATGTTGGGGTTGTCCCAGATGGGAACTGCAACTCCATGTCTGATACATCCTACCCTTCGATGAAGCAAGTGAGCGGCGGCGGCGGCGGCGGTTCTACTGGGAGTCAAGCGACCCAATTATCTGGAATGGATCGCGAAGCGAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGGAAATTCGAGAAAACCATCAGATACGCCTCCAGAAAAGCCTACGCCGAGACGCGTCCAAGAATCAAAGGCCGTTTCGCAAAGCGAACCGAGATGGAATCGGAGATGGTTGATCACATCTACAATTCCGCCTCCGCCGCTGCTTTCATGGTGGACGCCGGATACGGTGTCGTTCCGTCCTATTAA 1086 0.5681 MGFQELNGKTFSAATWALAAKPCDSCKSAAALLFCRADSAFLCVGCDSKIHGANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDRDIHSANPLARRHDRVPVVPFYDSAESLVKSTAAAVGFLVPGGAGDEEDSEAASWLLPNPKLPEGPEVKSGEVFFSDIDPFLDFDYPDAKFPHHHHHHCGGNDGVVPVQAKDPSPPVTNHPADNCFELDFSRSKLSAYNYTAQSLSQSISSSDVGVVPDGNCNSMSDTSYPSMKQVSGGGGGGSTGSQATQLSGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESEMVDHIYNSASAAAFMVDAGYGVVPSY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1234 361 MobiDBLite consensus disorder prediction 264 285 - -
Vvi11g1234 361 MobiDBLite consensus disorder prediction 264 284 - -
Vvi11g1234 361 ProSiteProfiles CCT domain profile. 287 329 IPR010402 GO:0005515
Vvi11g1234 361 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Vvi11g1234 361 Pfam CCT motif 287 329 IPR010402 GO:0005515
Vvi11g1234 361 CDD Bbox1_BBX-like 66 108 - -
Vvi11g1234 361 Pfam B-box zinc finger 21 62 IPR000315 GO:0008270
Vvi11g1234 361 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Vvi11g1234 361 CDD Bbox1_BBX-like 22 65 - -
Vvi11g1234 361 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Vvi11g1234 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 349 IPR045281 GO:0009909
Vvi11g1234 361 SMART bboxneu5 66 108 IPR000315 GO:0008270
Vvi11g1234 361 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1234 Vvi-Chr11 19620989 19622158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1234 1 361 C2C2-CO-like Transcription Factor Family AT5G57660 51.706 8.95e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi11g1234 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1234 - - vvi:100244502 713.761