Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1226 ATGGGAGTGGCTAATAACATAGGGAAGTACCAGCTGAGTAGGACGATCGGAGAAGGTACTTTTGCCAAGGTTAAGTTGGCAGTGAACACCGAGAATGGCCAGTATGTTGCCATCAAGATCATCGACAAGCACATGGTCATGGAGAACAATCTCATCTTTCAGGTACAGAGAGAGATAAGAACGATGAAGCTTCTGCATCATCCCAACATTGTTAGGATACATGAGGTCATTGGCACCAAGACAAAGATTTACATAGTAATGGAATATGTATCAGGAGGGCAGCTCTCAGACAAGATGTCTTACGTCAAGAAGCTAGATGAACAGGATGCTAGAAAACATTTCCAGCAGTTGATTGATGCAGTGGACTACTGCCATGGCAGAGGGGTTTCTCATAGAGATCTAAAGCCAGAGAACTTGCTTTTGGACAGCAAAGGAAATGTAAAAGTCTCGGATTTTGGACTCAGTGCATTGCGCAAGCCTGGAGATGTGTTATCCACAGCATGCGGTTCACCATGCTATGTAGCACCAGAGCTGCTTGCAAATAGGGGCTACGATGGAGCAGCTGCAGATATTTGGTCTTGTGGAGTAATCCTTTTTGAGTTACTTGCTGGTTATCTTCCATTTGATGATCGCAATTTGATGAGCTTGTATAAGAAGATAACAAAAGCAGAGTACACTTGTCCAGAGTGGTTCACACCAAGCCAAACAAAGCTAATCTCCAGGATCCTTGAGCCCAACCCTAGACGGGTAGAGCTCCAAAATCGAATATCAATAGCAGAGATTGTTGAAGATGAGTGGTTTCAGATTGACTACGAACCTGCTTCTGGAATTGAATTTGATGACAAAATCAACCTAGATGATGTTCATGCTGCTTTCAATTTGATTGAGGAAAATAACGCCGAAGCAAAGGTACCCCACTCAAGTTTCATTAATGCTTTCCAACTAATAGCAATGTCACATGACCTCGATTTGTCAGGTCTTTTTGAAGAGAAGGATGACAACAAGCAGAAAGCAAGGTTTGGATCCAAGCACACAATTGATGAAACTATAAAGAAAATTGAGGCCGCTGCAAAGGATGTGAGCCTCTCAGTTGAAAGGAAGAACTCTAAGATGAAGATGCATCCACAACAGAAGATGACTAGATGTTCTCGATCATATTTCAACCTATCAGCAGAGGTGATTGAGGTGGCTCCCACTCATTGTGTTGTAGAAATATCAAAATCTGCAGGCGAGCTTGGTGTGTACAAAGAGTTCTGCACAAGCCTATCATGTCTGCTAAAAGAGAAATCGGGCATTCCATTAGAAGAAAAAGATTCCAATGAAGATGTCGTTAACATCAAAGATATTCAGGAAACTGAATGCTCTGAAAAGAAAGATGACAAGGACGACAAAGACATCAATGGCTATTCTTCCTCTTGA 1419 0.4221 MGVANNIGKYQLSRTIGEGTFAKVKLAVNTENGQYVAIKIIDKHMVMENNLIFQVQREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLSDKMSYVKKLDEQDARKHFQQLIDAVDYCHGRGVSHRDLKPENLLLDSKGNVKVSDFGLSALRKPGDVLSTACGSPCYVAPELLANRGYDGAAADIWSCGVILFELLAGYLPFDDRNLMSLYKKITKAEYTCPEWFTPSQTKLISRILEPNPRRVELQNRISIAEIVEDEWFQIDYEPASGIEFDDKINLDDVHAAFNLIEENNAEAKVPHSSFINAFQLIAMSHDLDLSGLFEEKDDNKQKARFGSKHTIDETIKKIEAAAKDVSLSVERKNSKMKMHPQQKMTRCSRSYFNLSAEVIEVAPTHCVVEISKSAGELGVYKEFCTSLSCLLKEKSGIPLEEKDSNEDVVNIKDIQETECSEKKDDKDDKDINGYSSS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1226 472 Pfam NAF domain 308 365 IPR004041 GO:0007165
Vvi11g1226 472 Gene3D Kinase associated domain 1, KA1 306 429 - -
Vvi11g1226 472 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 411 - -
Vvi11g1226 472 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vvi11g1226 472 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Vvi11g1226 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi11g1226 472 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Vvi11g1226 472 FunFam Non-specific serine/threonine protein kinase 3 307 - -
Vvi11g1226 472 SMART serkin_6 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1226 472 MobiDBLite consensus disorder prediction 453 472 - -
Vvi11g1226 472 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Vvi11g1226 472 ProSiteProfiles Protein kinase domain profile. 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1226 472 Gene3D Transferase(Phosphotransferase) domain 1 90 286 - -
Vvi11g1226 472 Pfam Protein kinase domain 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1226 472 CDD CIPK_C 311 427 - -
Vvi11g1226 472 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Vvi11g1226 472 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1226 Vvi-Chr11 19455412 19458055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1226 7 422 CBL-interacting serine-threonine protein kinases AT1G01140 50.119 4.12e-144 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi11g1226 Pkinase 7.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1226 - - vvi:100259887 910.983