Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1206 ATGGGTCGAGCTCCATGCTGTGACAAAGCCAACGTGAAGAAGGGACCATGGTCCCCTGAGGAGGATGCTAAGCTTAAAACTTACATTGAGCAATATGGTACTGGAGGCAACTGGATTGCTCTTCCCCAGAAAATAGGTAGACTTAAGAGATGTGGAAAAAGTTGCAGACTGAGATGGTTGAATTACTTGAGACCTAACATCAAGCATGGTGGATTCTCTGAAGAGGAAGACAGCATCATCTGCAACCTCTATATAAGTATTGGTAGCAGGTGGTCGGTAATTGCAGCCCAATTGCCTGGAAGAACAGATAATGACATTAAGAACTACTGGAACACAAGACTGAAGAAGAAGTTGCTTGGAAAGCGTAAACAATCTCATTTCAATCGACTTTCGGTTGCAGGTCAGGACCCTAAAGATGCAACTGGTGTAGAAGATAATCCATATTCACAGGCCTTAAGCAATTCTGCCCTTGAAAGACTGCAGCTCCATATGCAGCTTCAGAGCCTGCAACACCCCTTTGCTTTCTACAATAATCCTGCACTGTGGCCCAAGCTGCATCCCCTCCAAGAAAAGCTGATCCAGAACCTCCAGAATGAGCTCCCCAGCCCTCTGATGCAACATACCCCACCTAGTTCTGACCCGATGGGACAAGAACAGAAGTCTGGGTTCTATGAACCGCCCACTGCTTCCATCACACTTCAACAAGAGTATCCGAAAACCAACAATCCAAAGGGAGATGAATTTGAGAAATCTTTAAATGTTTTGCCCTCCTCAGACAGTTCGATGGCCTACAACAGCGAAAATATGGTGGGTGCACCTATTATGTCTAAACCAGATGGTGTAGACCAATCCAACATTGCACAACAAGCAGTATCAACCTTTCAAGCTGAGCTTGATGACTTCCTTAATAACAAAATGGTTGGTTTCCTCCCACAGGAAGAGCAGATGACTGAAATAGATGGCTCCAAGGACAGCTTGGCTTGGTGGTCTAATGACTTTGACACAAAATCGGCATCCTCACACTCTTGGGATTCCACTTCTGTTATTCAGTCTGAGGGGATGTTCCAAGATTATGTATTAGGTTACAATCTGCAGTGA 1098 0.4499 MGRAPCCDKANVKKGPWSPEEDAKLKTYIEQYGTGGNWIALPQKIGRLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDSIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSHFNRLSVAGQDPKDATGVEDNPYSQALSNSALERLQLHMQLQSLQHPFAFYNNPALWPKLHPLQEKLIQNLQNELPSPLMQHTPPSSDPMGQEQKSGFYEPPTASITLQQEYPKTNNPKGDEFEKSLNVLPSSDSSMAYNSENMVGAPIMSKPDGVDQSNIAQQAVSTFQAELDDFLNNKMVGFLPQEEQMTEIDGSKDSLAWWSNDFDTKSASSHSWDSTSVIQSEGMFQDYVLGYNLQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1206 365 Gene3D - 71 138 - -
Vvi11g1206 365 CDD SANT 72 112 IPR001005 -
Vvi11g1206 365 FunFam Transcription factor MYB36 71 139 - -
Vvi11g1206 365 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Vvi11g1206 365 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Vvi11g1206 365 FunFam Transcription factor RAX3 7 69 - -
Vvi11g1206 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vvi11g1206 365 Gene3D - 7 69 - -
Vvi11g1206 365 MobiDBLite consensus disorder prediction 201 225 - -
Vvi11g1206 365 SMART sant 68 116 IPR001005 -
Vvi11g1206 365 SMART sant 13 65 IPR001005 -
Vvi11g1206 365 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Vvi11g1206 365 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Vvi11g1206 365 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vvi11g1206 365 CDD SANT 16 63 IPR001005 -
Vvi11g1206 365 PANTHER OS09G0431300 PROTEIN 1 353 - -
Vvi11g1206 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1206 Vvi-Chr11 19235090 19236560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1206 1 202 MYB Transcription Factor Family AT5G57620 75.000 1.59e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g1206 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1206 K09422 - vvi:100256441 733.791