Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1205 ATGTGTAATAAAGGAATTGCACGCGTGAGCGACTCTGTTGATCAGAAACAGCACCAGGCTGTGTATTTGATGGATAGCCCTTCTGCGACTCCTAGTTCAGCACATGGGTCGAACGATGAGAACCCTCGTGTGAAGTTTTTGTGTAGTTTTTCTGGTAGTATATTGCCCAGGCCACAGGATGGGAAGCTGAGGTATGTGGGTGGGGAGACGAGAATTGTAAGCGTGCCCCGGGATATTGGTTATGAGGAGCTGATGGGGAAGATGAAGGAGCTTTTTGATATGGCGGCAGTTTTGAAATACCAGCAACCTGATGAGGATCTTGATGCTCTTGTCTCGGTTGTGAACGATGATGACGTGACCAATATGATGGAGGAATATGACAAGTTGGGTTCTGGGGATGGGTTCACTAGGCTTAGGATTTTTCTGTTTTCGCATCCCGACCAAGATGGTGGTTCTTCGCATTTTGTTGATGTTGATGATACTGAGAGGAGGTATGTGGATGCTTTGAATAATTTAAACGATGCTTCGGATTTTAGGAAGCAGCAGGTGGGTGAGTCGCCGACTATGAGTGCAATTGATGATATTCATTTGGCCGAACAGTTCTTTAACTCCATAAGTCTTGAGGGTGGCCTCCATAACCAGAGAAACTGTGAGATGCCTATGTCTCAGTTCAACTTGCATCACCTTACAATTCCTCATATGGGGTCGGGGCAACACCAACCTGTTGCTCAGAGGTATAATGAAATGGAGTCTCAGTGGAACCCTGCCTACTTTTCCCCTAGGCATCACGGACACCATGATGCAAGGCCGCTGGCAGAGTATCCATCTTCACCTTCATCTGCGAGGTTCCGCATGCCATTTGGGGAGTTACCAGATAAATGCATTGATAGACTGCCTGAAGAATACAGTCGGCAGCCAGTGAATCCCCAAGCTCCATATGATCATCAACCACAAGCTTCAGATAATGTTGTATGGCTGCCAACAGGAGCTATATCCAGTGAGAAGGCAGGTTTTCCGGGTAGCATGCTTCATGGCCCCAATGTTTTTGAAGGGAATAGTATCTGTGAGCATTGCCGGATGACTTTCCATAGACATTTAGAGCAACCCAACATGGGGAATGGATTGCCTCCAGTTGCTAATCCATGTGCAGAGTGCCCCCCAGGTAGGGAGTCTTTTTTGTTGAATACAGATGCAAAAATGCAGCATGGAATATATCCAAAAGAGCACAATGATCCTCGATCTCTGTATAATGAAACTCATAATCATGAACGGGGATGGATTCTACAGCATCAGTTGAATCCTCGGGCTGAGGATGCAAGAGCTCAAATCTCTGGAGCTGGAAGGTTGAATGATCCGTACATTGTAGATGGTTCTGGCGTGAATTTTCCAGTTGCACATGGTAATTTGCTGGATAACCATCATGTGTCTTCAAATTATGTCCATCATGAAGACCCACGGTACATTCGAACTGGACCTGAATTGGGGAATGGAGTATTCCATGACCAAGCTGCAGCTGCTGGCCCTGCTATCAATGTTCCTCCTCTGGAAGAGCGTGCTGTTCGCTATGGCAATTTGCCTTATCCTTATGGAGCTGATAATCTTTACCAAGTCTCACACGGACATGTACCTGCACATGCTTTATGGAGAAATGTTCAGAACCCAATGCATGGTGCTCCCTCTTATGAAGCATCCACTTCTACCTGTCAAGCAAGTGGTTCAGTTAATCCAGGACCCATTAGGGGTACACGGGAGGGTAGTCCTAGGTTCTGTGTTGGGTTAGATAATCAAAATCCTTGGGGTGAATCATCACAGAAAATACTAGGTTTTGATGGCTCTGCTCTCCCTGATTATTCTTATGGCCATGCTACAAAATTGAACCCAAACACTCATGGTCAGGAAGGCCAACACCCATTTACTCCAGGTCCTGTTCCATCCCCATCTGACATGTTAAAGTTTGCTGCTCCTATGGAACCATTGCATTTCACAAATTCATCTCCAACTTTAATGGATGATAAGTTTGTTGCTTCAGCCAATTTGAGTTACAATCCAGAATCAAGGAATGATAATAATGTAAATCAAACAGTTATAATGGAGGCTAAACAAGCTTTTAGAGAAGGAAAAGAAGAGATTCACATGGAGAAGGTTGAAGATAATGATATGCCAGTTACCTCCCTTCCAGAGAAAAACAATAATGCAGATAAGAAATGTGAGGTGGCATCTCTGGAGCCTGTCAATTTACCAGCTGAAGATAATGTTTTTAAACCTGTTGTCAACGATTGTGCTCCTCTTGAAGAAGATGCTAAACTGGATGTTAGCAATTTGTCTTTCTTACCAGAGTTGATTGCTTCTGTCAAAAGGGCTGCATTAGAAAGTGCTGAGGAGGTGAAAGCTAAAGTTCAAGAAAATGCTGATGCAGTGCATGCTTCATCAACTAAAGAGGCCTCAAACGAATTGGAGACAGCCAATGCCCTGGGGGATTTGGAGTTGGATTCTGACAATGATAATGTGAATACATTCAAGATTGAGCCAACAAAGGCTGAAGAAGAAGCTCTTTCAAGGGGATTACAGACAATAAAAAATGATGATCTGGAGGAGATTCGGGAATTAGGTTCTGGTACGTATGGAGCTGTTTACCATGGAAAATGGAAGGGGTCTGATGTAGCAATAAAGAGAATCAAAGCCAGCTGCTTTGCTGGGAGACCATCTGAAAGAGAACGTTTGATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGGAATGGAGTATTTACATGGCAAGAATATTGTACATTTTGACTTAAAATGTGAGAATTTATTAGTAAATATGAGAGATCCACATCGGCCTGTTTGCAAGATTGGTGACTTGGGTTTATCAAAGGTTAAACAGCATACGTTAGTATCAGGAGGTGTTCGTGGAACACTTCCTTGGATGGCACCAGAGCTTCTTAGTGGGAAAACCAACATGGTAACAGAAAAGATTGATGTATACTCATTTGGAATTGTGATGTGGGAATTGCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGAGAGGCCATCATTCTCAGAAATCTCTCAAAAGCTGAGGAATATGGCTGATGCCCCAATTACAAAATAA 3411 0.4359 MCNKGIARVSDSVDQKQHQAVYLMDSPSATPSSAHGSNDENPRVKFLCSFSGSILPRPQDGKLRYVGGETRIVSVPRDIGYEELMGKMKELFDMAAVLKYQQPDEDLDALVSVVNDDDVTNMMEEYDKLGSGDGFTRLRIFLFSHPDQDGGSSHFVDVDDTERRYVDALNNLNDASDFRKQQVGESPTMSAIDDIHLAEQFFNSISLEGGLHNQRNCEMPMSQFNLHHLTIPHMGSGQHQPVAQRYNEMESQWNPAYFSPRHHGHHDARPLAEYPSSPSSARFRMPFGELPDKCIDRLPEEYSRQPVNPQAPYDHQPQASDNVVWLPTGAISSEKAGFPGSMLHGPNVFEGNSICEHCRMTFHRHLEQPNMGNGLPPVANPCAECPPGRESFLLNTDAKMQHGIYPKEHNDPRSLYNETHNHERGWILQHQLNPRAEDARAQISGAGRLNDPYIVDGSGVNFPVAHGNLLDNHHVSSNYVHHEDPRYIRTGPELGNGVFHDQAAAAGPAINVPPLEERAVRYGNLPYPYGADNLYQVSHGHVPAHALWRNVQNPMHGAPSYEASTSTCQASGSVNPGPIRGTREGSPRFCVGLDNQNPWGESSQKILGFDGSALPDYSYGHATKLNPNTHGQEGQHPFTPGPVPSPSDMLKFAAPMEPLHFTNSSPTLMDDKFVASANLSYNPESRNDNNVNQTVIMEAKQAFREGKEEIHMEKVEDNDMPVTSLPEKNNNADKKCEVASLEPVNLPAEDNVFKPVVNDCAPLEEDAKLDVSNLSFLPELIASVKRAALESAEEVKAKVQENADAVHASSTKEASNELETANALGDLELDSDNDNVNTFKIEPTKAEEEALSRGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPGGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRRIIAMDASFGMEYLHGKNIVHFDLKCENLLVNMRDPHRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKTNMVTEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPRWCEPEWKYLMESCWASDPAERPSFSEISQKLRNMADAPITK* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1205 1136 Pfam PB1 domain 59 143 IPR000270 GO:0005515
Vvi11g1205 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 63 145 - -
Vvi11g1205 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 951 1136 - -
Vvi11g1205 1136 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 856 950 - -
Vvi11g1205 1136 CDD STKc_MAP3K-like 869 1126 - -
Vvi11g1205 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 988 1000 IPR008271 GO:0004672|GO:0006468
Vvi11g1205 1136 ProSiteProfiles Protein kinase domain profile. 863 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1205 1136 SMART serkin_6 863 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1205 1136 Gene3D - 62 145 - -
Vvi11g1205 1136 ProSitePatterns Protein kinases ATP-binding region signature. 869 890 IPR017441 GO:0005524
Vvi11g1205 1136 Gene3D Transferase(Phosphotransferase) domain 1 950 1135 - -
Vvi11g1205 1136 CDD PB1_UP2 47 143 - -
Vvi11g1205 1136 Gene3D Phosphorylase Kinase; domain 1 849 949 - -
Vvi11g1205 1136 SUPERFAMILY Protein kinase-like (PK-like) 853 1124 IPR011009 -
Vvi11g1205 1136 PANTHER SERINE-THREONINE PROTEIN KINASE 94 1127 - -
Vvi11g1205 1136 MobiDBLite consensus disorder prediction 558 586 - -
Vvi11g1205 1136 SMART PB1_new 58 143 IPR000270 GO:0005515
Vvi11g1205 1136 MobiDBLite consensus disorder prediction 558 576 - -
Vvi11g1205 1136 SUPERFAMILY CAD & PB1 domains 60 150 - -
Vvi11g1205 1136 Pfam Protein tyrosine and serine/threonine kinase 864 1126 IPR001245 GO:0004672|GO:0006468
Vvi11g1205 1136 PRINTS Tyrosine kinase catalytic domain signature 1097 1119 IPR001245 GO:0004672|GO:0006468
Vvi11g1205 1136 PRINTS Tyrosine kinase catalytic domain signature 982 1000 IPR001245 GO:0004672|GO:0006468
Vvi11g1205 1136 PRINTS Tyrosine kinase catalytic domain signature 1053 1075 IPR001245 GO:0004672|GO:0006468
Vvi11g1205 1136 PRINTS Tyrosine kinase catalytic domain signature 945 958 IPR001245 GO:0004672|GO:0006468
Vvi11g1205 1136 MobiDBLite consensus disorder prediction 620 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1205 Vvi-Chr11 19187109 19204657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1205 38 1132 MAP Kinase Kinase Kinase AT5G57610 58.356 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vvi11g1205 PK_Tyr_Ser-Thr 1.5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1205 - - vvi:100266729 2343.15