Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1204 ATGGGTAAATGTATCACCTCACAAAAAATAATAGCAGTTGTTGATGTTGGCTTATTGAGCATAGAAGAGAAAGAAGCCAGAGGAGAGGTGATGGTCACAGGAGCATCCTTTAAATCTGGAGCAACTCATACTAGGAGTAAATCAACTTTGTGGGAATATTCTTCGGTATGTTCTCGGCTCACATGGTTGGCATCAGCTGCAAACCAATTTGCGGGTCAAGTTCCCACAAGTCTTGGTCTCTTGGAACACCTCGGCTCAATTCCAAAGAGAATCATGTCCTTGAAATATTTGAATTGGCTTGATTTGGGGGACTACAATCTGAATGGAGCCATCCCATCAACAATTACGAGAATGAAAAACTTGCGGAGATTGTATCTTGCTGGTAACCAACTTGAGCAAACCATTCCAAACGAGATTTGCCTCCTTAGAAAATTGGGAGAAATGGACCTCGGGAATAATAAGCTGTCTGGAACAATTCCAAGTTGTAAAGGAAATCTTACTCATTTACAGAGCATGCTCTTGAGTTGCAATTCACTCTCCTCTGCCATTCCATCAAGATCTTGCCATGCTACAAATGATTTCTCTGAAGCCAACATCCTTGGAGTGGGAAGCTTTGGTTCTGTTTTCAAAGGAATACTTTCTGAGGGGACACTTGTTGCTGTTAAAGTTCTGAATCTACAACTGGAGGGTGCTTTCAAAAGTTTTGATGCAGAATGCAAAGTGCTGGCAAGGGTTCGACATAGGAATCTGGTTAAAGTCATAAGCTCATGCTCCAACCCTGAGCTAAGAGCTCTTGTGCTGCAATACATGCCCAATGGAAGCCTTGAGAAATGGCTGTATTCTTTCAACTACTGCTTTAGTCTCTTCCAAAGAGTGAGCATCATGGAGGATGTTGCATTAGCTTTGGAGTATCTTCATCATGGTCAAGCCGAGCCTGTGGTGCAATGTGATTTGAAGCCCAGCAATGTCCTCTTGGATGATGAGATGGTTGCTCATGTGGGTGACTTTGGCATTGCAAAAATTTTGACCCAAAAAAAGACTGAAACACAAACCAAGACTCTAGGCACTCTTGGCTATATTGCACCAGAGTACAGCTCAGAAGGAAGGGTGTCCACAAGAGGGGATACTTATAGCTATGGAATAATGTTGATGGAAATGCTTACAGGAAAAAACACACTGATGATATGTTTTTCGGAGAATTGA 1203 0.4231 MGKCITSQKIIAVVDVGLLSIEEKEARGEVMVTGASFKSGATHTRSKSTLWEYSSVCSRLTWLASAANQFAGQVPTSLGLLEHLGSIPKRIMSLKYLNWLDLGDYNLNGAIPSTITRMKNLRRLYLAGNQLEQTIPNEICLLRKLGEMDLGNNKLSGTIPSCKGNLTHLQSMLLSCNSLSSAIPSRSCHATNDFSEANILGVGSFGSVFKGILSEGTLVAVKVLNLQLEGAFKSFDAECKVLARVRHRNLVKVISSCSNPELRALVLQYMPNGSLEKWLYSFNYCFSLFQRVSIMEDVALALEYLHHGQAEPVVQCDLKPSNVLLDDEMVAHVGDFGIAKILTQKKTETQTKTLGTLGYIAPEYSSEGRVSTRGDTYSYGIMLMEMLTGKNTLMICFSEN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1204 400 FunFam Serine-threonine protein kinase plant-type 178 269 - -
Vvi11g1204 400 Gene3D Ribonuclease Inhibitor 36 201 IPR032675 -
Vvi11g1204 400 SMART serkin_6 194 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1204 400 ProSiteProfiles Protein kinase domain profile. 194 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1204 400 Pfam Protein kinase domain 195 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1204 400 SMART LRR_typ_2 166 190 IPR003591 -
Vvi11g1204 400 SMART LRR_typ_2 118 142 IPR003591 -
Vvi11g1204 400 SUPERFAMILY Protein kinase-like (PK-like) 172 391 IPR011009 -
Vvi11g1204 400 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515
Vvi11g1204 400 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Vvi11g1204 400 SUPERFAMILY L domain-like 43 207 - -
Vvi11g1204 400 Gene3D Phosphorylase Kinase; domain 1 202 270 - -
Vvi11g1204 400 PANTHER OS04G0122200 PROTEIN 189 391 - -
Vvi11g1204 400 Gene3D Transferase(Phosphotransferase) domain 1 271 398 - -
Vvi11g1204 400 ProSitePatterns Protein kinases ATP-binding region signature. 200 222 IPR017441 GO:0005524
Vvi11g1204 400 FunFam Leucine-rich repeat receptor-like protein kinase PXC1 36 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1204 Vvi-Chr11 19174942 19180227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1204 60 390 Receptor kinase-like Gene Family AT3G47580 35.109 5.80e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g1204 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1204 - - vvi:100244409 457.988