Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1203 ATGTTGATGAAGAAGCACTTTTACAAGATCTCCCTTATGGGAATGCTGATGGTGCATTCATTTAGGGTCAGCCTGGCTATTTCTTCCTCAAACGTCACTGATATATCTGCTCTACTTGCCTTTAAATCAGAGATTGTGGGAAGTAACTGGACTGAAACTGAAAACTTCTGTAACTGGGTTGGAGTAACTTGCAGCCATAGAAGACAGCGAGTAACAGGTTTGCGCCTTGGAGGCATGGGTCTCCAAGGCACCATCTCTCCTTATGTTGGTAACCTTTCCTTCCTTGTTAGGCTTGATCTCTCTAACAACAGTTTTCATGGCCATCTGATACCTGAAATAGGTCATTTGCGTCGCTTGGAAGTGCTCATATTAGAAGGGAACCTGTTGGAAGGAGCGATCCCTGCAAGTATACATCACTGCCAAAAGCTTAAAGTCATCTCTCTTTCAAAGAATGGATTTGTTGGAGTCATACCAAAAGAGTTAAGCTTCTTATCTTCACTACGTCACTTATTCCTTGGACGAAACAATCTTACAGGTACCATTCCACCTTCCTTGGTCAACAACTCAAAGTTAGAATGGCTTGGTTTAGAACAAAACTACCTTCAAGGAAGCATTCCAAATGAGATAGGGAATCTTCAAAATTTGCAGCAACTTAGCTTGTCTCAAAATGGCCTTACTGGTTTGATACCCCCCTCAATTTTCAATATCTCCTCTCTACGAGGAGTGTCCTTGTCATTCCATTCCCTTTCAGGAACTCTTCCATCGAGCCTTGGGCTTTGGCTTCCAAATCTTGAAGAACTTGACCTAGGAGGTAATCAGCTTAGTGGAAATATCCCTTTGTGTCTGTCAAATTCTTCTTACCTCAAAAAATTACGTTTAAGTTCCAACCAATTCTCGGGACCAGTCCTCAAAAGTCTAGGCCACTTGGAACACCTGGTAGAGCTTGATCTGGCAGGAAATCAACTAACAAGTCAATCAGGAAGTCTTGAACTTAGCTTTCTTACAGCTTTGACAGGATGCAAATCCCTGGAAAAGTTGTCTATAAGCAATAATCCATTGAATGGCCTACTACCAGAATCTGTTGGAAATTTGTCAAGTTCCCTTCAAATGTTTGTTGCTTCTTCATGCGAAATAAAGGGTCCAATTCCAAAGGGTATTGGTTCATTGAAAATTTTGAATTGGCTTGAATTGAGCAACAACCACCTGAACGGAACCATTCCATCAACAGTTAAGGGAATGAAAAGCCTGCAGAGGTTGCATATCGGTGGCAATCGACTTGAAGAAAACATTCCAAATGAGATTTGCCTTCTAACTAAATTGGGGGAAATGGAACTTCAAAACAATAACCTGTCAGGATCAATTCCAAGTTGCATAGGAAATCTAAATCATTTACAGATCATGGACCTGAGTTCCAATTCACTATCCTCATCAATTCCATCCAGCTTATGGAGCCTTGAAAATATCTGGTTCTTGAATTTGTCATGTAATTCACTGCATGGAAGCCTCAATGCCAACATGAGAGCTTTGAAAATGCTGGAAAGCATTGACTTATCTTGGAACCGAATCTCAGGTAACATTCCAACCATTTTTGGTGCCTTTGAAAGCTTAAGTTCTCTTAACCTCTCAAGGAACTCATTCGGGGGACATATTTCTGGATCACTTGGTGAATTGATAACATTGGATTTTATGGACCTCTCCCACAACAATCTATCTGGTGCAATACCCAAATCTTTGGAGGCTCTTTCACATCTCCAATACTTGAACTTGTCTGTCAATAACCTATCAGGGGAAATTCCAAGCAGAGGGCCTTTTGAAAACTTCACGGCAACATCTTTTCTGGAGAATGGAGCGCTTTGTGGGCAAGCAATTTTTCAAGTTCCACCTTGTAGAAGTCATGGGCCCCGGAATTCAAAATCTGCATCTCTCTTGAAATATATTCTTCCAACTTTGGCATCGGCGGCAATCCTTGTAGCGGCAATCCTTGTAGCTCTCATTCGAATGATGATGAAGAACCGAAGGTGTAATGCAAGAACAGGTGAACATCTGGTACGTGAAGTGGATCAGATAATTTCATATGAAGGACTTTGTCAAGCTACAGATGATTTCTCAGAAGCCAACATTATTGGAGTGGGAGGTTTTGGTTCTGTATTCAAAGGAATACTTAATGACAAGTTCACGGTTGCCATTAAAGTTCTAAATTTGCAACTTGAGGGAGCTCTTGCCCACTTTAATGCGGAATTTGTGGCTCTCAGAAACGTTCGGCACACGAATCTTGTTAAGCTCATATGTTCATGCTCTGAAACTGAGCTTGGTGCTCTAGTTTTACCATATATGCCTAATGGAAGCCTGGAGAAGTGGTTGTATTCTGAAAACTACTGTTTGAATCTCTTCCAAAGAGTGAGCATCATGGTGGATGTTGCATCAGCCTTGGAATATTTGCATCATGGTCTACCAGACCCTGTGGTTCACTGTGATTTGAACCCCAGCAATGTCCTCTTAGACAATGACATGGTTGCACATGTGGGTGACTTTGGCATTGCAAAGATATTGACACATAAGAGGCCTGCCACACCAAGCATTACTCTAGGTACCCTTGGTTATGTTGCACCAGAGCATGGCATGAGTGGAAGGGTGTCAACAAGAACTGATGTTTACAGCTATGGGATAATGTTGTTGGGGATGCTTACAGGAAAGAAGCCCACTGATGATATGTTTTCCGGGGAACTAACTTTGAGGCAGTGGGTTACGTCTTCAATTTCTAACAAAATAATGGAAGTCATAGATCGTAAACTATTGAAGACCGAAGATGGAGGAGATGCAATTGCCACAAATTGCAATCTTTTAGCCATTTCAAGTTGGGGTTAG 2865 0.4164 MLMKKHFYKISLMGMLMVHSFRVSLAISSSNVTDISALLAFKSEIVGSNWTETENFCNWVGVTCSHRRQRVTGLRLGGMGLQGTISPYVGNLSFLVRLDLSNNSFHGHLIPEIGHLRRLEVLILEGNLLEGAIPASIHHCQKLKVISLSKNGFVGVIPKELSFLSSLRHLFLGRNNLTGTIPPSLVNNSKLEWLGLEQNYLQGSIPNEIGNLQNLQQLSLSQNGLTGLIPPSIFNISSLRGVSLSFHSLSGTLPSSLGLWLPNLEELDLGGNQLSGNIPLCLSNSSYLKKLRLSSNQFSGPVLKSLGHLEHLVELDLAGNQLTSQSGSLELSFLTALTGCKSLEKLSISNNPLNGLLPESVGNLSSSLQMFVASSCEIKGPIPKGIGSLKILNWLELSNNHLNGTIPSTVKGMKSLQRLHIGGNRLEENIPNEICLLTKLGEMELQNNNLSGSIPSCIGNLNHLQIMDLSSNSLSSSIPSSLWSLENIWFLNLSCNSLHGSLNANMRALKMLESIDLSWNRISGNIPTIFGAFESLSSLNLSRNSFGGHISGSLGELITLDFMDLSHNNLSGAIPKSLEALSHLQYLNLSVNNLSGEIPSRGPFENFTATSFLENGALCGQAIFQVPPCRSHGPRNSKSASLLKYILPTLASAAILVAAILVALIRMMMKNRRCNARTGEHLVREVDQIISYEGLCQATDDFSEANIIGVGGFGSVFKGILNDKFTVAIKVLNLQLEGALAHFNAEFVALRNVRHTNLVKLICSCSETELGALVLPYMPNGSLEKWLYSENYCLNLFQRVSIMVDVASALEYLHHGLPDPVVHCDLNPSNVLLDNDMVAHVGDFGIAKILTHKRPATPSITLGTLGYVAPEHGMSGRVSTRTDVYSYGIMLLGMLTGKKPTDDMFSGELTLRQWVTSSISNKIMEVIDRKLLKTEDGGDAIATNCNLLAISSWG* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1203 954 Pfam Leucine Rich repeat 309 325 IPR001611 GO:0005515
Vvi11g1203 954 Pfam Leucine Rich repeat 582 597 IPR001611 GO:0005515
Vvi11g1203 954 Gene3D Transferase(Phosphotransferase) domain 1 778 949 - -
Vvi11g1203 954 PANTHER OS04G0122200 PROTEIN 107 208 - -
Vvi11g1203 954 SUPERFAMILY Protein kinase-like (PK-like) 687 913 IPR011009 -
Vvi11g1203 954 SMART LRR_typ_2 581 606 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 413 437 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 212 236 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 461 485 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 309 332 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 261 285 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 509 532 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 340 363 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 164 188 IPR003591 -
Vvi11g1203 954 SMART LRR_typ_2 116 140 IPR003591 -
Vvi11g1203 954 Gene3D Ribonuclease Inhibitor 32 183 IPR032675 -
Vvi11g1203 954 Gene3D Phosphorylase Kinase; domain 1 664 777 - -
Vvi11g1203 954 Pfam Protein kinase domain 703 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1203 954 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 336 632 - -
Vvi11g1203 954 ProSiteProfiles Leucine-rich repeat profile. 311 332 IPR001611 GO:0005515
Vvi11g1203 954 Pfam Leucine rich repeat N-terminal domain 34 65 IPR013210 -
Vvi11g1203 954 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Vvi11g1203 954 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 302 - -
Vvi11g1203 954 SMART LRR_sd22_2 413 432 - -
Vvi11g1203 954 SMART LRR_sd22_2 309 331 - -
Vvi11g1203 954 SMART LRR_sd22_2 437 463 - -
Vvi11g1203 954 SMART LRR_sd22_2 212 238 - -
Vvi11g1203 954 SMART LRR_sd22_2 557 583 - -
Vvi11g1203 954 SMART LRR_sd22_2 261 280 - -
Vvi11g1203 954 SMART LRR_sd22_2 509 528 - -
Vvi11g1203 954 SMART LRR_sd22_2 340 366 - -
Vvi11g1203 954 FunFam Leucine-rich repeat receptor-like protein kinase 31 183 - -
Vvi11g1203 954 SUPERFAMILY L domain-like 48 300 - -
Vvi11g1203 954 Gene3D Ribonuclease Inhibitor 329 636 IPR032675 -
Vvi11g1203 954 Gene3D Ribonuclease Inhibitor 184 328 IPR032675 -
Vvi11g1203 954 Pfam Leucine rich repeat 439 498 IPR001611 GO:0005515
Vvi11g1203 954 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Vvi11g1203 954 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 778 951 - -
Vvi11g1203 954 ProSiteProfiles Protein kinase domain profile. 702 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1203 954 Pfam Leucine Rich Repeat 263 284 IPR001611 GO:0005515
Vvi11g1203 954 Pfam Leucine Rich Repeat 342 364 IPR001611 GO:0005515
Vvi11g1203 954 SUPERFAMILY L domain-like 367 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1203 Vvi-Chr11 19170563 19173539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1203 30 932 Receptor kinase-like Gene Family AT3G47570 39.572 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g1203 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1203 - - vvi:100854235 1832.38