Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1200 ATGTCTGTGGAGAGGCTTTTCAAGGAGTCCCTTGTCGGAGTGCTGTTAGTGCACTCATGTTTGGCCATTTCTTCCTCCAACGTCACTGATCTATCTGCTCTGCTTGCGTTCAAGTCTGAGATCAAGCTTGACCCCAACAACATTTTGGGGAGCAACTGGACTGAAGCTGAAAACTTCTGCAATTGGGTTGGGGTCACTTGTAGCCATCGCAGACAAAGAGTTACAGCTTTGAGGCTTAATGACATGGGTCTCCAAGGCACCATTTCTCCTTATGTTGGTAATCTTTCCTTCCTTCATTGGCTTAATCTTGGTAACAACAGTTTTCATGGCCATGTAGTGCCTGAAATAGGTCATTTGCATCGCTTGAGAGTACTCATATTACAAAAAAACCTGTTGGAAGGAGTGATCCCTGCAAGTATACAACACTTCCAAAAGCTTCAGATCATCTCTCTCACAGAAAATGAATTTACAGGGGTGATACCAAAATGGTTAAGCAACTTACCCTCACTTCGAGTCCTATTCCTTGGAGGGAACAATCTTACAGGTACTATTCCACCTTCCTTGGGTAACAATTCAAAGTTGGAATGGCTTGGTTTAGAACAAAACCACCTTCACGGAACCATTCCAAATGAGATAGGGAATCTTCAGAATTTGAAGGGCATTAACTTTTTCAGAAATAACTTCACTGGGTTGATACCCCTGACAATTTTCAATGTCTCCACCCTAGAACGAATATTATTAGAACAAAATTTTCTTTCAGGGACTCTTCCTTCAACTCTTGGGCTTTTGCTTCCAAACCTAAAGGTCCTTGCCCTAGGCGTAAATAAGCTCAGTGGAGTTATCCCTTTGTATCTATCAAATTGTTCTCAACTCATATATTTAGATTTAGAAGTCAACCGATTTACCGGAGAAGTCCCCAGAAATATAGGCCACTCAGAACAGCTCCAAACACTTATTCTGCATGGAAATCAGCTAACAGGTTCAATTCCAAGGGAAATTGGTTCCTTGACAAATTTGAATCTGCTTGCATTGAGTAATAACAATCTGAGTGGTGCCATTCCATCAACAATTAAAGGAATGAAAAGCCTGCAGAGACTATATCTTGATCGTAACCAACTTGAGGAAAGCATTCCGAACGAGATGTGCCTCCTTAGAAACTTGGGGGAAATGAGCCTTGGAAATAATAAGCTGTCTGGATCAATTCCAAGTTGCATAGAAAATGTTAGTTATTTACAGATCTTGCTGTTGGATTCCAATTTGTTGTCCTCATCAATTCCATCCAACTTGTGGAGCCTTGAAAATCTCTGGTCTTTGGATTTATCATTTAATTCATTGGGTGGAAGCCTCCATGCCAACATGAGATCAATGAAAATGCTGCAGACCATGGACTTGTCTTGGAACAGAATCTCAGGTAACATTCCAACCATTCTTGGGGCCTTTGAAAGCTTAAGTTCTCTAAATCTGTCGGGAAACTTATTTTGGGGGTCTATTCCCGAATCTCTTGGCGAATTGATCACATTGGATTATATGGACCTCTCTCACAATAATCTATCTGGATCAATACCCAAATTATTGGTGGCTCTTTCACATCTCCGACACCTGAATTTGTCTTTCAATAAGCTGTCTGGGGAAATTCCAAGGGACGGGTGTTTTGAGAACTTTACAGCAGCATCCTTTTTGGAGAACCAAGCACTCTGCGGGCAGCCCATCTTTCATGTCCCACCTTGCCAGCGTCATATCACCCAAAAATCAAAAAATAAATTTCTCTTCAAAATTTTCCTTCCATGCATTGCATCAGTGCCAATCCTCGTGGCTCTCGTCCTCCTGATGATAAAATATCGACAGAGTAAGGTGGAAACACTGAACACAGTTGATGTAGCACCTGCAGTGGAGCATAGAATGATTTCATATCAAGAGCTTCGTCATGCTACGAATGATTTCTCTGAAGCTAACATCCTTGGAGTGGGAAGCTTTGGTTCTGTCTTCAAAGGACTACTTTCCGAGGGGACACTAGTCGCTGTTAAAGTTTTGAATCTACAACTAGAAGGTGCTTTCAAAAGCTTTGATGCAGAATGCAAGGTGCTGGCAAGGGTTCGACATAGGAATCTGGTTAAAGTCATAACTTCATGCTCCAACCCTGAGCTAAGAGCTCTGGTTTTGCAATACATGCCCAATGGAAGCCTTGAGAAGTGGTTGTATTCTTTCAACTACAGCTTGAGTCTCTTCCAAAGAGTGAGCATCTTGTTGGATGTGGCATTAGCTTTGGAGTATCTTCATCATGGTCAATCCGAGCCTGTGGTGCACTGTGATTTGAAGCCCAGCAATGTCCTCTTGGATGATGAGATGGTTGCTCATGTGGGCGACTTTGGAATTGCAAAGATTTTGGCTGAAAACAAGACTGTGACTCAAACCAAGACTCTAGGTACTCTTGGCTACATTGCACCAGAGTATGGCTTGGAAGGAAGGGTATCCTCAAGAGGTGATATTTACAGCTATGGAATAATGTTGTTAGAGATGGTTACAAGAAAGAAGCCCATGGATGAGATGTTTTCTGAAGAAATGAGTTTGAGACAATGGGTTAAAGCAACAATTCCCAACAAAATAATGGAGGTGGTGGACGAAAATCTAGCAAGGAACCAAGATGGGGGAGGTGCGATTGCAACACAAGAAAAACTTTTGGCCATCATGGAATTGGGCTTGGAGTGTAGCAGAGAATTACCAGAGGAGAGGATGGACATAAAAGAAGTTGTGGTTAAGCTTAACAAAATCAAATCGCAACTACTTTGA 2787 0.4198 MSVERLFKESLVGVLLVHSCLAISSSNVTDLSALLAFKSEIKLDPNNILGSNWTEAENFCNWVGVTCSHRRQRVTALRLNDMGLQGTISPYVGNLSFLHWLNLGNNSFHGHVVPEIGHLHRLRVLILQKNLLEGVIPASIQHFQKLQIISLTENEFTGVIPKWLSNLPSLRVLFLGGNNLTGTIPPSLGNNSKLEWLGLEQNHLHGTIPNEIGNLQNLKGINFFRNNFTGLIPLTIFNVSTLERILLEQNFLSGTLPSTLGLLLPNLKVLALGVNKLSGVIPLYLSNCSQLIYLDLEVNRFTGEVPRNIGHSEQLQTLILHGNQLTGSIPREIGSLTNLNLLALSNNNLSGAIPSTIKGMKSLQRLYLDRNQLEESIPNEMCLLRNLGEMSLGNNKLSGSIPSCIENVSYLQILLLDSNLLSSSIPSNLWSLENLWSLDLSFNSLGGSLHANMRSMKMLQTMDLSWNRISGNIPTILGAFESLSSLNLSGNLFWGSIPESLGELITLDYMDLSHNNLSGSIPKLLVALSHLRHLNLSFNKLSGEIPRDGCFENFTAASFLENQALCGQPIFHVPPCQRHITQKSKNKFLFKIFLPCIASVPILVALVLLMIKYRQSKVETLNTVDVAPAVEHRMISYQELRHATNDFSEANILGVGSFGSVFKGLLSEGTLVAVKVLNLQLEGAFKSFDAECKVLARVRHRNLVKVITSCSNPELRALVLQYMPNGSLEKWLYSFNYSLSLFQRVSILLDVALALEYLHHGQSEPVVHCDLKPSNVLLDDEMVAHVGDFGIAKILAENKTVTQTKTLGTLGYIAPEYGLEGRVSSRGDIYSYGIMLLEMVTRKKPMDEMFSEEMSLRQWVKATIPNKIMEVVDENLARNQDGGGAIATQEKLLAIMELGLECSRELPEERMDIKEVVVKLNKIKSQLL* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1200 928 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 284 - -
Vvi11g1200 928 CDD STKc_IRAK 653 923 - -
Vvi11g1200 928 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 723 928 - -
Vvi11g1200 928 SUPERFAMILY RNI-like 208 548 - -
Vvi11g1200 928 FunFam Serine-threonine protein kinase plant-type 628 722 - -
Vvi11g1200 928 Gene3D Transferase(Phosphotransferase) domain 1 723 927 - -
Vvi11g1200 928 SMART serkin_6 647 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1200 928 ProSiteProfiles Protein kinase domain profile. 647 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1200 928 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 285 580 - -
Vvi11g1200 928 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 186 - -
Vvi11g1200 928 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vvi11g1200 928 Gene3D Phosphorylase Kinase; domain 1 618 722 - -
Vvi11g1200 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Vvi11g1200 928 SMART LRR_typ_2 119 142 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 167 191 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 264 288 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 336 359 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 432 456 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 528 553 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 360 384 IPR003591 -
Vvi11g1200 928 SMART LRR_typ_2 480 504 IPR003591 -
Vvi11g1200 928 SUPERFAMILY Protein kinase-like (PK-like) 630 920 IPR011009 -
Vvi11g1200 928 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Vvi11g1200 928 Gene3D Ribonuclease Inhibitor 179 263 IPR032675 -
Vvi11g1200 928 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Vvi11g1200 928 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Vvi11g1200 928 Pfam Leucine rich repeat 314 373 IPR001611 GO:0005515
Vvi11g1200 928 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Vvi11g1200 928 Gene3D Ribonuclease Inhibitor 264 585 IPR032675 -
Vvi11g1200 928 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 921 - -
Vvi11g1200 928 ProSiteProfiles Leucine-rich repeat profile. 362 384 IPR001611 GO:0005515
Vvi11g1200 928 SUPERFAMILY L domain-like 53 263 - -
Vvi11g1200 928 Pfam Protein kinase domain 648 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1200 Vvi-Chr11 19145520 19148523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1200 26 928 Receptor kinase-like Gene Family AT3G47570 38.274 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g1200 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1200 - - vvi:100249567 1754.95