LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g1195	ATGCAGAGGCCGACGACGCGGTTGATGGAGAGGTCGAATACGATGAATAGAGGGAAGCGGACTTTGGAGGGGGAGGAGGAGGAGCAGCCGGAGCGGAAGCGGCCGGCTCTCGCAAGTGTAATAGTGGAAGCTCTCAAGGTGGATAGTCTGCAGAAACTTTGCTCATCCTTGGAACCTATTCTTCGTAGAGTTGTCAGTGAAGAAGTGGAGCGTGCTTTGGCAAAATTAGGCCCTGCCAGGCTCAATGGGAGGTCTTCCCCTAAACGAATTGAAGGACCTGATGGAAGGAACTTGCAGTTGCAGTTTAGGTCCAGGCTGTCTCTTCCCCTTTTTACAGGAGGAAAAGTAGAGGGGGAGCAGGGTGCTGCAATCCATATTGTCCTGGTGGATGCCAACAGCGGCAGTGTTGTAACTTCTGGACCTGAATCCTCTGTAAAACTGGATGTTGTTGTCCTTGAAGGTGATTTCAATAATGAAGATGAAGAGGGCTGGACTCAGGAAGAATTTGACAGTCATGTGGTTAAAGAGCGTGAAGGAAAGAGACCACTTTTAACTGGGGACTTGCAAGTAACACTCAAAGAAGGTGTTGGAACACTAGGAGACCTCACATTTACAGATAATTCTAGTTGGATACGGAGCAGGAAGTTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATTGTATAAGAAACACTATCCACCTGCATTAACTGATGATGTGTGGAGATTGGAGAAGATTGGCAAGGATGGTTCATTCCACAAGAGGCTAAATAATTCCCACATTTACACAGTGGAAGATTTCCTCCGGCTTGTGGTTAGAGACTCCCAAAAATTGCGGAGTATCCTGGGAAGTGGCATGTCAAATAAGATGTGGGAGGCTCTTATAGAGCATGCAAAGACTTGCACCATGAGTGGAAAGTTCTATGTTTATTATTCTGATGATACAAGAAATGTTGGTGTTATTTTTAACAACATCTATGAGCTGAGTGGTCTTATTGCTGGGGAGCAGTATTTCTCTGCTGATTCTCTTTCTGAGAGCCAAAAGGTCTATGTCGATAACTTGGTTAAGAAAGCATACGAAAACTGGAATCAAGTTGAAGAGTATGATGGCAAGTCTTTGAGCTTCAAGCAAATTATCAGGTCAAGTACATCGCGAAATGAACATATGATAGGCTCCATGGATTATCCTACTGCTTTAGAGCCTCTGCTACCTCTTCCACGTCCGCCAGTTGCAGGTCCTTCTGAGCAGTCCTTGATGGATCCAGGCATATCAGTTGGAGGTTCAGGGTACAATGATGGTCTTGCAACCAGATACACGGCTCAGCCCCAGCTTGTAAATTCCAGTTCCCGTGCCCAGTTTGATGGCCCTTCATTCCCTTCACATGACCAGCTGGTCAACAATTCTCACCAAATCCAAAGCACTAGGAACGATAGCAGTGTTGGTTTGGCCCTTGGTCCACCACAGTCATCTACAATGGGGTTCCAGGCTCTCAACTCATCTATTCAGCACTCCAATCTTAACCCTTTTAGTGACTTGTTGAATAACCGAGACAAGGGAGTTGATGACTATTTCACGGAGGAAGAGATTCGGCTTAGAAGTCATGAGATGCTTGAGAGCGATGATATGCAGCAATTGCTCCGAGTCTTCAGCATGGGAGGCCATATTATTCCCGATGATGGGTATGGTTTCCCACCATACATGGCATCGCCTTCAAACTGTCTCTATGAGGAGGAGGATCGAAGCCGTCCTGGAAAAGCTGTTGTCGGTTGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGGAAGAAAGCAGCAGAGAAGCGGGCACAGCTTGTTGAGTTAGAAGATGATTAG	1929	0.465	MQRPTTRLMERSNTMNRGKRTLEGEEEEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLNGRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHIVLVDANSGSVVTSGPESSVKLDVVVLEGDFNNEDEEGWTQEEFDSHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVALGFCEGIHIREAKTEAFTVKDHRGELYKKHYPPALTDDVWRLEKIGKDGSFHKRLNNSHIYTVEDFLRLVVRDSQKLRSILGSGMSNKMWEALIEHAKTCTMSGKFYVYYSDDTRNVGVIFNNIYELSGLIAGEQYFSADSLSESQKVYVDNLVKKAYENWNQVEEYDGKSLSFKQIIRSSTSRNEHMIGSMDYPTALEPLLPLPRPPVAGPSEQSLMDPGISVGGSGYNDGLATRYTAQPQLVNSSSRAQFDGPSFPSHDQLVNNSHQIQSTRNDSSVGLALGPPQSSTMGFQALNSSIQHSNLNPFSDLLNNRDKGVDDYFTEEEIRLRSHEMLESDDMQQLLRVFSMGGHIIPDDGYGFPPYMASPSNCLYEEEDRSRPGKAVVGWLKIKAAMRWGFFIRKKAAEKRAQLVELEDD*	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g1195	642	Pfam	Calmodulin binding protein C-terminal domain	328	390	IPR046829	-
	Vvi11g1195	642	Coils	Coil	629	642	-	-
	Vvi11g1195	642	MobiDBLite	consensus disorder prediction	13	34	-	-
	Vvi11g1195	642	PANTHER	OS02G0177800 PROTEIN	17	564	IPR012416	GO:0005516
	Vvi11g1195	642	MobiDBLite	consensus disorder prediction	1	34	-	-
	Vvi11g1195	642	Pfam	Calmodulin binding protein central domain	258	323	IPR046830	-
	Vvi11g1195	642	Pfam	Calmodulin binding protein-like N-terminal domain	98	245	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g1195	Vvi-Chr11	19034420	19047104	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g1195	12	637	Calmodulin-binding Proteins	AT5G57580	67.551	0.0	854

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g1195	-		-	vvi:100264980	1265.37