Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi11g1174 | ATGTCGGACGATTATGAAACCCCGAGTCCTGATGGAACCCAGTTTCCGGATGGCTTGAGGGTCCTGGCGGTTGATGACAATATAGTTTGTCTGAAAATCCTCGTAACTTTGCTTGAGCAATGTCGGTACAAAGTTACTGCTACAACGAAGGCTTGTGAAGCTCTGGAGATGTTGAGGGAGAACCGAGAAAATTTCGATATTGTGATCACCGACGTGAAGATGCCGGACATGGACGGATTCACGCTTCTGAAGATCATAGGACTCGAAATGGACATACCAGTAATCATGACGTCTGTGAACGACGACAGAAGCACGGTCTTGAAGGGGATAAGGCATGGCGCCCGGGACTATCTGCTGAAGCCTGTGAGGGTGTTGGAGATCAAGAACATATGGCAGCATGTTGTAAGGAAAAATTTGTTTGATTCCGGTAAGCCTGGCGTCAAGGAGGAAAAAGCTATGGAGATGGAGAAAAGCAAGGAGAAAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGATCATCCCAAGGAACATTCTTTTGAAGATGGATCTGTCCGGAAGAAACAGCGGCTTAATTGGACGTCTGAGCTCCATATCAAATTTCTCAACGCCATTCACCAGCTGGAAACAGCAGATAGTAGGTGTTTGATTTAA | 651 | 0.4624 | MSDDYETPSPDGTQFPDGLRVLAVDDNIVCLKILVTLLEQCRYKVTATTKACEALEMLRENRENFDIVITDVKMPDMDGFTLLKIIGLEMDIPVIMTSVNDDRSTVLKGIRHGARDYLLKPVRVLEIKNIWQHVVRKNLFDSGKPGVKEEKAMEMEKSKEKGGGEEEEEEEDHPKEHSFEDGSVRKKQRLNWTSELHIKFLNAIHQLETADSRCLI* | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi11g1174 | 216 | SUPERFAMILY | CheY-like | 17 | 137 | IPR011006 | - | |
| Vvi11g1174 | 216 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 19 | 207 | IPR045279 | GO:0009736 | |
| Vvi11g1174 | 216 | SMART | REC_2 | 19 | 131 | IPR001789 | GO:0000160 | |
| Vvi11g1174 | 216 | MobiDBLite | consensus disorder prediction | 145 | 184 | - | - | |
| Vvi11g1174 | 216 | Pfam | Response regulator receiver domain | 21 | 129 | IPR001789 | GO:0000160 | |
| Vvi11g1174 | 216 | ProSiteProfiles | Response regulatory domain profile. | 20 | 135 | IPR001789 | GO:0000160 | |
| Vvi11g1174 | 216 | Gene3D | - | 19 | 157 | - | - | |
| Vvi11g1174 | 216 | Gene3D | - | 183 | 213 | - | - | |
| Vvi11g1174 | 216 | MobiDBLite | consensus disorder prediction | 145 | 164 | - | - | |
| Vvi11g1174 | 216 | CDD | REC_typeB_ARR-like | 21 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi11g1174 | Vvi-Chr11 | 18936290 | 18937226 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi11g1174 | 14 | 207 | Response Regulator Gene Family | AT4G31920 | 54.124 | 1.25e-59 | 194 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Vvi11g1174 | Response_reg | 1.8e-23 | CL0304 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi11g1174 | - | K14491 | vvi:100266808 | 376.711 |