Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1173 ATGGCTTCTCTGCAGCAATCTTCCCTCAAAACCAATGTCTCCACTGAGCTTCTCATAGCTCGCATTGTACAAATCCATGCCAACATCTGCAAGCTTGAGTCCCTGAGGCCTTCAAAGCAAGTCAACAGCCTCTTCACCCACCTTGTGAAGCTCTGCACCCCTCCATCATCCATAGACATCACAGCCTTACCAGAAGAAATTCAGCTGATTCGCCAAAGCCTCATAACTCTCTGTGGCAGAGCTGAAGGCCTACTTGAGCTTGAGTTCTCAACTTTCCTCACAAATGTCCCCCAAGCCCTCAACAATCTCAACCTGTTTCCATACTATGGGAATTATGTTAAGCTGGCCAACTTGGAGTACAGAATTCTTAGTGACAATGGGGTTGTGCAGCCCAAGAAGGTGGCCTTCATTGGCTCTGGTCCACTGCCTCTTACCACCCTTATAATGGCCACACATCACATGAAATCCACCTGTTTCGACAACTTTGATATGGATGAATCAGCTAACGCTGTGGCTCGCCAATTGGTAGCCTCTGATGCTGAGCTGCAGAGGCGCGTGAAGTTTGAGACTCGCGATATAATGGAAGTTAGGGACAAGCTTGGGGAGTATGACTGCATCTTTTTGGCAGCACTGGTGGGGATGAGTAAGGAGGAGAAGGTTAAGATTCTTGGGCATGTGAGGAAGTATATGAAGGAAGGGGGAACTCTACTTGTGAGAAGCGCGAAAGGGGCTAGAGCTTTCCTGTACCCTGTGGTTGAGGAGGAGGACTTGCTTGGATTTGAGGTTCTCACCATTTTCCATCCTACTAATGAAGTCATCAATTCAGTTGTTCTCGCTCGCAAGCCTATCGATTAA 855 0.4795 MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDITALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNVPQALNNLNLFPYYGNYVKLANLEYRILSDNGVVQPKKVAFIGSGPLPLTTLIMATHHMKSTCFDNFDMDESANAVARQLVASDAELQRRVKFETRDIMEVRDKLGEYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGTLLVRSAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLARKPID* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1173 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 240 IPR029063 -
Vvi11g1173 284 CDD AdoMet_MTases 162 238 - -
Vvi11g1173 284 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Vvi11g1173 284 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Vvi11g1173 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 284 IPR004298 GO:0030410|GO:0030418
Vvi11g1173 284 PANTHER NICOTIANAMINE SYNTHASE 3 11 282 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1173 Vvi-Chr11 18933627 18934481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1173 16 281 Nicotianamine Synthase Gene Family AT1G09240 53.704 2.28e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1173 K05953 - vvi:100244492 554.288